CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84103
CDX84198
CDY12261
CDY22589
CDY31695
CDY32123
CDY40465
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	CDX84103	AT1G32150.1	18315949
AT2G46270.1	CDY12261	AT1G32150.1	18315949
AT2G46270.1	CDY22589	AT1G32150.1	18315949
AT2G46270.1	CDX84198	AT2G35530.1	18315949
AT2G46270.1	CDY31695	AT2G35530.1	18315949
AT2G46270.1	CDY32123	AT2G35530.1	18315949
AT2G46270.1	CDY40465	AT2G35530.1	18315949
AT2G46270.1	CDY65764	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004550.1-P	Field mustard	nucleus	88.41	96.57
CDX80004	Canola	golgi	92.51	86.46
AT2G46270.1	Thale cress	nucleus	77.05	83.51
CDX95685	Canola	nucleus	59.66	82.33
KRG97109	Soybean	nucleus	51.69	50.35
KRH68860	Soybean	nucleus	51.45	50.12
VIT_15s0046g01440.t01	Wine grape	nucleus	51.21	49.3
CDY07176	Canola	nucleus	43.0	49.04
CDY48506	Canola	nucleus	43.0	48.77
KRH06537	Soybean	nucleus	48.31	47.17
KRH47979	Soybean	nucleus	48.07	46.93
PGSC0003DMT400000266	Potato	nucleus	46.86	46.52
Solyc01g095460.2.1	Tomato	nucleus	46.62	46.17
PGSC0003DMT400084203	Potato	nucleus	43.48	43.58
Solyc05g050220.2.1	Tomato	nucleus	42.75	42.55
GSMUA_Achr6P32000_001	Banana	nucleus	34.78	38.2
Os05t0569300-01	Rice	nucleus	34.3	37.37
Zm00001d039065_P006	Maize	nucleus	33.82	37.14
TraesCS1A01G409800.2	Wheat	nucleus	33.82	36.65
EES18712	Sorghum	nucleus	33.33	36.13
Os01t0658900-01	Rice	nucleus	31.4	36.11
GSMUA_Achr1P05050_001	Banana	nucleus	36.96	35.92
Zm00001d043992_P001	Maize	nucleus	32.37	35.54
CDY24770	Canola	nucleus	26.57	35.14
TraesCS1D01G417100.1	Wheat	nucleus	33.82	34.83
CDY35476	Canola	nucleus	26.33	34.82
GSMUA_Achr9P05310_001	Banana	nucleus	34.78	34.62
CDX69240	Canola	nucleus	26.09	34.5
CDX75592	Canola	nucleus	26.09	34.5
TraesCS1B01G439800.1	Wheat	nucleus	33.57	34.49
Zm00001d040500_P001	Maize	nucleus	14.73	31.44
Zm00001d043908_P001	Maize	nucleus	14.49	31.41
Zm00001d025638_P001	Maize	nucleus	14.49	31.41
HORVU1Hr1G090030.11	Barley	nucleus, plastid	34.3	31.07
CDY32123	Canola	nucleus	10.63	28.76
CDY12261	Canola	nucleus	25.85	28.08
CDY22589	Canola	nucleus	25.36	27.42
CDY31695	Canola	nucleus	25.6	26.84
KXG33037	Sorghum	nucleus	31.4	26.21
CDY65764	Canola	nucleus	25.12	25.94
CDY40465	Canola	nucleus	18.6	25.67
CDX84103	Canola	nucleus, plastid	20.29	24.28
CDX84198	Canola	nucleus	26.33	23.75
HORVU1Hr1G089970.10	Barley	cytosol	21.01	23.51

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078HXG9	UniProt:A0A078HXG9	EnsemblPlants:CDY42029	ProteinID:CDY42029
ProteinID:CDY42029.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00074042001	InterPro:IPR004827
InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EE399C	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaC04g01070DBnaC04g01070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXG9]

Coordinates

chrLK032512:+:113073..116184

Molecular Weight (calculated)

45185.8 Da

IEP (calculated)

10.145

GRAVY (calculated)

-0.956

Length

414 amino acids

Sequence
(BLAST)

001: MSQLIKHHRS LRFFSIWISE RAYRFLEKET IVVKCGNVKT MGKSEEPKVT KSDNKPSSPP ADQTNVHVYP DWAAIQAYYG PRVAMPPYYN SAMAAASGHP
101: PPPYMWNPQH MMSPYGTPYA AVYPHGGGVY AHPGFPMPQS QKGAALSTPG TPLNIDTPSK STGNTENGLM KKLKEFDGLA MSLGNGNNGD EGKRSRNSSE
201: TDGSSDGSDG NTTGADEPKL KRSREGTPTK DEKKHLVQSS SFRSVSQSSG DNVVKHSVQG GGGAIVSAAG VSANSNPTFM SQSLAMVPPE TWLQNERELK
301: RERRKQSNRE SARRSRLRKQ AETEELARKV EALTAENMAL RSELNQLNEK SNNLRGANAT LLDKLKSSEP EKRVKSSGNG DDKNKKQGDN ETNSTSKLHQ
401: LLDTKPRADG VAAR

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.