Factsheet for Zm00001d040500_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015118_P001
Zm00001d024041_P002
Zm00001d039206_P001
Zm00001d041142_P010
Zm00001d053967_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	Zm00001d015118_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d024041_P002	AT1G32150.1	18315949
AT2G46270.1	Zm00001d039206_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d041142_P010	AT1G32150.1	18315949
AT2G46270.1	Zm00001d053967_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d015118_P001	AT2G35530.1	18315949
AT2G46270.1	Zm00001d024041_P002	AT2G35530.1	18315949
AT2G46270.1	Zm00001d039206_P001	AT2G35530.1	18315949
AT2G46270.1	Zm00001d041142_P010	AT2G35530.1	18315949
AT2G46270.1	Zm00001d053967_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d015118_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d024041_P002	AT1G32150.1	18315949
AT4G01120.1	Zm00001d039206_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d041142_P010	AT1G32150.1	18315949
AT4G01120.1	Zm00001d053967_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d015118_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d024041_P002	AT2G35530.1	18315949
AT4G01120.1	Zm00001d039206_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d041142_P010	AT2G35530.1	18315949
AT4G01120.1	Zm00001d053967_P001	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025638_P001	Maize	nucleus	95.36	96.86
Zm00001d043908_P001	Maize	nucleus	95.36	96.86
Zm00001d039065_P006	Maize	nucleus	93.3	48.01
EES18712	Sorghum	nucleus	80.93	41.1
Os05t0569300-01	Rice	nucleus	69.07	35.26
TraesCS1A01G409800.2	Wheat	nucleus	64.95	32.98
TraesCS1D01G417100.1	Wheat	nucleus	65.46	31.59
TraesCS1B01G439800.1	Wheat	nucleus	64.95	31.27
HORVU1Hr1G090030.11	Barley	nucleus, plastid	68.04	28.88
Zm00001d043992_P001	Maize	nucleus	45.36	23.34
Zm00001d024285_P001	Maize	nucleus	24.74	22.54
GSMUA_Achr6P32000_001	Banana	nucleus	41.24	21.22
CDX95685	Canola	nucleus	30.93	20.0
KRH06537	Soybean	nucleus	41.24	18.87
GSMUA_Achr9P05310_001	Banana	nucleus	40.21	18.75
KRH47979	Soybean	nucleus	40.72	18.63
Zm00001d015118_P001	Maize	nucleus	27.84	18.62
KRH68860	Soybean	nucleus	40.21	18.35
GSMUA_Achr1P05050_001	Banana	nucleus	40.21	18.31
KRG97109	Soybean	nucleus	39.69	18.12
VIT_15s0046g01440.t01	Wine grape	nucleus	39.18	17.67
Bra037382.1-P	Field mustard	nucleus	31.44	16.62
Zm00001d053967_P001	Maize	nucleus	26.8	16.56
CDY07176	Canola	nucleus	30.93	16.53
CDY48506	Canola	nucleus	30.93	16.44
Zm00001d039206_P001	Maize	nucleus	17.53	16.35
Solyc01g095460.2.1	Tomato	nucleus	35.05	16.27
PGSC0003DMT400084203	Potato	nucleus	34.54	16.22
AT4G01120.1	Thale cress	nucleus	29.9	16.11
Solyc05g050220.2.1	Tomato	nucleus	34.54	16.11
Bra004550.1-P	Field mustard	nucleus	31.44	16.09
PGSC0003DMT400000266	Potato	nucleus	34.54	16.07
AT2G46270.1	Thale cress	nucleus	31.44	15.97
HORVU1Hr1G089970.10	Barley	cytosol	30.41	15.95
Zm00001d034571_P001	Maize	nucleus	28.87	15.73
Zm00001d041142_P010	Maize	nucleus	29.38	14.92
CDY42029	Canola	nucleus	31.44	14.73
CDX80004	Canola	golgi	31.44	13.77
Zm00001d047967_P003	Maize	nucleus	29.9	13.71
Zm00001d005244_P002	Maize	nucleus	26.8	13.68
VIT_02s0025g01020.t01	Wine grape	nucleus	27.84	13.57
Zm00001d019166_P002	Maize	nucleus	25.77	12.89
Zm00001d024041_P002	Maize	nucleus	17.53	9.88
Zm00001d028372_P005	Maize	nucleus	29.9	9.57

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A0A1D6MR32	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	ProteinID:ONM31456.1	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0008432221	EnsemblPlantsGene:Zm00001d040500	EnsemblPlants:Zm00001d040500_P001	EnsemblPlants:Zm00001d040500_T001	InterPro:bZIP	SEG:seg

Description

bZIP-transcription factor 42G-box-binding factor 3

Coordinates

chr3:-:47004098..47005326

Molecular Weight (calculated)

21093.9 Da

IEP (calculated)

10.137

GRAVY (calculated)

-0.627

Length

194 amino acids

Sequence
(BLAST)

001: MSDKYNQYLS TCVLAPNHTL GNATILPQHC FSAPVIKPSA TNVANSRAIG TTLSPPPGVM VPVHNAVPSD LSVKDERELK REKRKQSNRE SARRSRLRKQ
101: AETEELATQV ESLAAENTSL RSEIGRLTES SEKLRLENSA LMVKLKDTAE PSPSKAAASP SSPRASAENF LSMIDSANAP SVSRHTEHVG PRLR

Best Arabidopsis Sequence Match ( AT4G01120.1 )
(BLAST)

001: MGSNEEGNPT NNSDKPSQAA APEQSNVHVY HHDWAAMQAY YGPRVGIPQY YNSNLAPGHA PPPYMWASPS PMMAPYGAPY PPFCPPGGVY AHPGVQMGSQ
101: PQGPVSQSAS GVTTPLTIDA PANSAGNSDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT TGGEQSRRKR RQQRSPSTGE
201: RPSSQNSLPL RGENEKPDVT MGTPVMPTAM SFQNSAGMNG VPQPWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLSVK VDALVAENMS LRSKLGQLNN
301: ESEKLRLENE AILDQLKAQA TGKTENLISR VDKNNSVSGS KTVQHQLLNA SPITDPVAAS

Arabidopsis Description

GBF2G-box-binding factor 2 [Source:UniProtKB/Swiss-Prot;Acc:P42775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.