CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07569
KRH39598
KRH45342
KRH74331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	KRH07569	AT1G32150.1	18315949
AT2G46270.1	KRH39598	AT1G32150.1	18315949
AT2G46270.1	KRH45342	AT1G32150.1	18315949
AT2G46270.1	KRH74331	AT1G32150.1	18315949
AT2G46270.1	KRH07569	AT2G35530.1	18315949
AT2G46270.1	KRH39598	AT2G35530.1	18315949
AT2G46270.1	KRH45342	AT2G35530.1	18315949
AT2G46270.1	KRH74331	AT2G35530.1	18315949
AT4G01120.1	KRH07569	AT1G32150.1	18315949
AT4G01120.1	KRH39598	AT1G32150.1	18315949
AT4G01120.1	KRH45342	AT1G32150.1	18315949
AT4G01120.1	KRH74331	AT1G32150.1	18315949
AT4G01120.1	KRH07569	AT2G35530.1	18315949
AT4G01120.1	KRH39598	AT2G35530.1	18315949
AT4G01120.1	KRH45342	AT2G35530.1	18315949
AT4G01120.1	KRH74331	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06537	Soybean	nucleus	90.57	90.57
KRH68860	Soybean	nucleus	77.59	77.41
KRG97109	Soybean	nucleus	77.59	77.41
VIT_15s0046g01440.t01	Wine grape	nucleus	65.09	64.19
Solyc01g095460.2.1	Tomato	nucleus	55.19	55.98
PGSC0003DMT400000266	Potato	nucleus	54.72	55.64
AT2G46270.1	Thale cress	nucleus	48.58	53.93
Bra004550.1-P	Field mustard	nucleus	47.64	53.3
PGSC0003DMT400084203	Potato	nucleus	50.94	52.3
Solyc05g050220.2.1	Tomato	nucleus	49.29	50.24
CDY07176	Canola	nucleus	42.45	49.59
CDX95685	Canola	nucleus	34.91	49.33
Bra037382.1-P	Field mustard	nucleus	42.45	49.05
AT4G01120.1	Thale cress	nucleus	41.51	48.89
CDY48506	Canola	nucleus	41.75	48.49
CDY42029	Canola	nucleus	46.93	48.07
GSMUA_Achr6P32000_001	Banana	nucleus	41.51	46.68
CDX80004	Canola	golgi	47.41	45.37
TraesCS1A01G409800.2	Wheat	nucleus	38.68	42.93
Zm00001d039065_P006	Maize	nucleus	37.26	41.91
GSMUA_Achr1P05050_001	Banana	nucleus	41.98	41.78
Os05t0569300-01	Rice	nucleus	37.03	41.32
GSMUA_Achr9P05310_001	Banana	nucleus	40.33	41.11
Zm00001d040500_P001	Maize	nucleus	18.63	40.72
TraesCS1D01G417100.1	Wheat	nucleus	38.44	40.55
Zm00001d025638_P001	Maize	nucleus	18.16	40.31
Zm00001d043908_P001	Maize	nucleus	18.16	40.31
EES18712	Sorghum	nucleus	36.32	40.31
TraesCS1B01G439800.1	Wheat	nucleus	38.21	40.2
Os01t0658900-01	Rice	nucleus	32.08	37.78
Zm00001d043992_P001	Maize	nucleus	32.08	36.07
HORVU1Hr1G090030.11	Barley	nucleus, plastid	38.68	35.89
KRH69948	Soybean	nucleus	28.07	35.21
KRH08310	Soybean	nucleus	26.89	33.73
KRH76850	Soybean	nucleus	26.89	32.66
KRH28623	Soybean	nucleus	27.59	31.71
KRH39598	Soybean	nucleus	30.42	31.16
KRH74331	Soybean	nucleus	30.42	31.08
KRH45342	Soybean	nucleus	30.42	30.94
KRH07569	Soybean	nucleus	30.19	30.77
KRG89193	Soybean	nucleus	19.34	27.52
KXG33037	Sorghum	nucleus	31.84	27.22
HORVU1Hr1G089970.10	Barley	cytosol	23.35	26.76

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100820423	MapMan:15.5.4.1	EMBL:ACUP02004185	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G060400
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1KI00	InterPro:IPR004827	EnsemblPlants:KRH47979	ProteinID:KRH47979
ProteinID:KRH47979.1	ProteinID:KRH47980.1	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002337ED4	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:5358317..5363410

Molecular Weight (calculated)

45554.7 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.819

Length

424 amino acids

Sequence
(BLAST)

001: MGNSEDEKSV KTGSPSSSPA TTDQTNQPNI HVYPDWAAMQ YYGPRVNIPP YFNSAVASGH APHPYMWGPP QPMMPPYGPP YAAFYSHGGV YTHPAVAIGP
101: HLHGQGVSSS PAVGTHSSIE SPTKLSGNTD QGLMKKSKGF DGLAMSIGNC NAESAEHGAE NRQSQSVDTE GYSDGSDGNT AGANQTKRKR CREGTLTTDG
201: EGKTELQNGP ASKETSSSKK IVSATPASVA GTLVGPVVSS VMATTLELRN PSTVDSKANS TSAPQPCAIV PNETCLQNER ELKRERRKQS NRESARRSRL
301: RKQAETEELA RKVDMLTAEN VSLKSEIIQL TEGSEQMRME NSALREKLRN TQLGQREEII LSSIESKRAA PVSTENLLSR VNNSSSNDRT TENENDFCEN
401: KPNSGAKLHQ LLDTNPRADA VAAG

Best Arabidopsis Sequence Match ( AT2G46270.1 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.