CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07569
KRH39598
KRH45342
KRH74331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	KRH07569	AT1G32150.1	18315949
AT4G36730.1	KRH39598	AT1G32150.1	18315949
AT4G36730.1	KRH45342	AT1G32150.1	18315949
AT4G36730.1	KRH74331	AT1G32150.1	18315949
AT4G36730.1	KRH07569	AT2G35530.1	18315949
AT4G36730.1	KRH39598	AT2G35530.1	18315949
AT4G36730.1	KRH45342	AT2G35530.1	18315949
AT4G36730.1	KRH74331	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08310	Soybean	nucleus	30.2	26.63
KRH69948	Soybean	nucleus	29.19	25.74
Bra011701.1-P	Field mustard	nucleus	25.17	23.96
CDX69240	Canola	nucleus	25.17	23.96
AT4G36730.1	Thale cress	nucleus	25.17	23.81
KRH76850	Soybean	nucleus	27.85	23.78
CDX75592	Canola	nucleus	24.83	23.64
CDY24770	Canola	nucleus	24.16	23.0
Bra010572.1-P	Field mustard	nucleus	23.83	22.68
CDY35476	Canola	nucleus	23.49	22.36
KRH28623	Soybean	nucleus	27.52	22.22
VIT_18s0001g12120.t01	Wine grape	nucleus	29.19	21.86
KRH06537	Soybean	nucleus	28.86	20.28
KRH68860	Soybean	nucleus	28.52	20.0
KRG97109	Soybean	nucleus	27.85	19.53
KRH47979	Soybean	nucleus	27.52	19.34
KRH07569	Soybean	nucleus	24.16	17.31
KRH45342	Soybean	nucleus	24.16	17.27
KRH39598	Soybean	nucleus	23.83	17.15
KRH74331	Soybean	nucleus	23.83	17.11

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102665715	MapMan:15.5.4.1	EMBL:ACUP02012191	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G007700
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1ND16	InterPro:IPR004827	ProteinID:KRG89192.1	EnsemblPlants:KRG89193
ProteinID:KRG89193	ProteinID:KRG89193.1	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00023DCFFE	InterPro:bZIP	:

Description

hypothetical protein

Coordinates

chr20:-:704850..709659

Molecular Weight (calculated)

33692.7 Da

IEP (calculated)

5.698

GRAVY (calculated)

-0.843

Length

298 amino acids

Sequence
(BLAST)

001: MGTQKSNMFD APFKYMVPED KEIPDRPLPS HWTPSMQAYN TSGSTPTPFL NQQAAGSHMP LYMWVNQVNN TLLQSDALHD PRMLSSKPTV AGDAVLAFSE
101: IVHRTFGEQN LNSIKKCARN LQPKSLITKE STENGSKSSI MKTNRDGVLC SEANGNKGSP DEDHITNDFP STKKQHCNLM LENASSTKLN QDLETGLDAS
201: DANAQLVNLE KDEIRRERKR QSNRESARRS RMRKEKECEE LHKQMEMLKD ENSVLTQRLK SLSEECLEIC NENDAIEEEL IKMYGPESIA DLLLFKPT

Best Arabidopsis Sequence Match ( AT4G36730.2 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QGSIRKPSFG QMLADASSQS TTGEIQGSVP MKPVAPGTNL
201: NIGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RVESLSNENQ SLRDELQRLS SECDKLKSEN NSIQDELQRV LGAEAVANLE
301: QNAAGSKDGE GTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.