CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07569
KRH39598
KRH45342
KRH74331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	KRH07569	AT1G32150.1	18315949
AT4G36730.1	KRH39598	AT1G32150.1	18315949
AT4G36730.1	KRH45342	AT1G32150.1	18315949
AT4G36730.1	KRH74331	AT1G32150.1	18315949
AT4G36730.1	KRH07569	AT2G35530.1	18315949
AT4G36730.1	KRH39598	AT2G35530.1	18315949
AT4G36730.1	KRH45342	AT2G35530.1	18315949
AT4G36730.1	KRH74331	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76850	Soybean	nucleus	81.3	85.96
KRH08310	Soybean	nucleus	68.56	74.85
KRH69948	Soybean	nucleus	68.29	74.56
VIT_04s0023g01360.t01	Wine grape	nucleus	60.98	61.81
Solyc02g062950.2.1	Tomato	nucleus	55.56	60.12
Solyc02g085610.2.1	Tomato	nucleus	44.44	57.75
AT4G36730.1	Thale cress	nucleus	47.43	55.56
Bra011701.1-P	Field mustard	nucleus	46.88	55.27
CDX69240	Canola	nucleus	46.88	55.27
CDY24770	Canola	nucleus	46.61	54.95
Bra010572.1-P	Field mustard	nucleus	46.61	54.95
CDY35476	Canola	nucleus	46.61	54.95
CDX75592	Canola	nucleus	46.61	54.95
PGSC0003DMT400032960	Potato	nucleus	52.3	48.25
KRH39598	Soybean	nucleus	35.77	31.88
KRH74331	Soybean	nucleus	35.77	31.81
KRH07569	Soybean	nucleus	35.77	31.73
KRH45342	Soybean	nucleus	35.77	31.65
KRH68860	Soybean	nucleus	33.88	29.41
KRG97109	Soybean	nucleus	33.33	28.94
KRH06537	Soybean	nucleus	32.79	28.54
KRH47979	Soybean	nucleus	31.71	27.59
KRG89193	Soybean	nucleus	22.22	27.52

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:547788	UniProt:A0A0R0HQF0	EMBL:ACUP02006760	ncoils:Coil
EnsemblPlantsGene:GLYMA_11G065000	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EnsemblPlants:KRH28623	ProteinID:KRH28623
ProteinID:KRH28623.1	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0003DEB42B	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:4916855..4922192

Molecular Weight (calculated)

39748.1 Da

IEP (calculated)

6.005

GRAVY (calculated)

-0.794

Length

369 amino acids

Sequence
(BLAST)

001: MPLPLGLPPH PLSLRHGNSF FELIWMGTGE ESTAKVPKPS STSSIQIPLA PSYPDWSSSM QAYYAPGATP PAFFASNIAS PTPHSYMWGS QHPLIPPYST
101: PVPYPAIYPP GNVYAHPSMA MTLSTTQNGT EFVGKGSDEK DRVSAKSSKA VSANNGSKAG DNGKASSGPR NDGTSQSAES GSEGSSDASD ENTNQQESAT
201: NKKGSFDQML VDGANARNNS VSIIPQPGNP AVSMSPTSLN IGMNLWNASP AGDEAAKMRQ NQSSGAVTPP TIMGREVALG EHWIQDEREL KKQKRKQSNR
301: ESARRSRLRK QAECEELQKR VESLGSENQT LREELQRVSE ECKKLTSEND SIKEELERLC GPEAVANLE

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.