CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07569
KRH39598
KRH45342
KRH74331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	KRH07569	AT1G32150.1	18315949
AT4G36730.1	KRH39598	AT1G32150.1	18315949
AT4G36730.1	KRH45342	AT1G32150.1	18315949
AT4G36730.1	KRH74331	AT1G32150.1	18315949
AT4G36730.1	KRH07569	AT2G35530.1	18315949
AT4G36730.1	KRH39598	AT2G35530.1	18315949
AT4G36730.1	KRH45342	AT2G35530.1	18315949
AT4G36730.1	KRH74331	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28623	Soybean	nucleus	85.96	81.3
KRH69948	Soybean	nucleus	72.78	75.15
KRH08310	Soybean	nucleus	72.78	75.15
VIT_04s0023g01360.t01	Wine grape	nucleus	66.48	63.74
Solyc02g062950.2.1	Tomato	nucleus	59.03	60.41
Solyc02g085610.2.1	Tomato	nucleus	47.56	58.45
AT4G36730.1	Thale cress	nucleus	50.43	55.87
Bra011701.1-P	Field mustard	nucleus	49.86	55.59
CDX69240	Canola	nucleus	49.86	55.59
CDX75592	Canola	nucleus	49.57	55.27
CDY24770	Canola	nucleus	49.28	54.95
CDY35476	Canola	nucleus	49.0	54.63
Bra010572.1-P	Field mustard	nucleus	48.71	54.31
PGSC0003DMT400032960	Potato	nucleus	56.16	49.0
KRH39598	Soybean	nucleus	37.82	31.88
KRH74331	Soybean	nucleus	37.82	31.81
KRH07569	Soybean	nucleus	37.82	31.73
KRH45342	Soybean	nucleus	37.54	31.41
KRH68860	Soybean	nucleus	34.96	28.71
KRG97109	Soybean	nucleus	34.38	28.24
KRG89193	Soybean	nucleus	23.78	27.85
KRH06537	Soybean	nucleus	33.52	27.59
KRH47979	Soybean	nucleus	32.66	26.89

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100808533	MapMan:15.5.4.1	EMBL:ACUP02000644	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G177400
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K7K4G6	EnsemblPlants:KRH76850	ProteinID:KRH76850
ProteinID:KRH76850.1	ProteinID:KRH76851.1	ProteinID:KRH76852.1	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002336DC8	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:51378231..51380622

Molecular Weight (calculated)

37341.9 Da

IEP (calculated)

5.536

GRAVY (calculated)

-0.871

Length

349 amino acids

Sequence
(BLAST)

001: MGTDEESTAK VSKPSSTSST KIPLAPSYPD WSSSVQAYYA PGVTPRAFFA STVASPTPHP YLWGSQQPLI PPYGTPVPYP AIYPPGNVYA HPSMATTPST
101: TQNGTELLGK ESDGKDRVSA KSSKGVSTNS GSKAGDNGKA GSGSGNDGVS QSAESGSEGS SDASDENTDQ QESATNKKGS FDQMLVDGAN ARKNSVSTIP
201: HSSVPGNPAV SMSPTSLNIG MDLWDASPAG AEAAKMRHNQ SSASEAVTPP TIMGREVPLG EQWIQDDREL KKQKRKQSNR ESARRSRLRK QAECEELQKR
301: VESLRSENRI LREELQRVSE ECKKLTSEND SIKEELERMC GSEAIANLE

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.