CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07569
KRH39598
KRH45342
KRH74331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	KRH07569	AT1G32150.1	18315949
AT4G36730.1	KRH39598	AT1G32150.1	18315949
AT4G36730.1	KRH45342	AT1G32150.1	18315949
AT4G36730.1	KRH74331	AT1G32150.1	18315949
AT4G36730.1	KRH07569	AT2G35530.1	18315949
AT4G36730.1	KRH39598	AT2G35530.1	18315949
AT4G36730.1	KRH45342	AT2G35530.1	18315949
AT4G36730.1	KRH74331	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08310	Soybean	nucleus	94.67	94.67
KRH76850	Soybean	nucleus	75.15	72.78
KRH28623	Soybean	nucleus	74.56	68.29
VIT_04s0023g01360.t01	Wine grape	nucleus	73.08	67.86
Solyc02g062950.2.1	Tomato	nucleus	66.27	65.69
Solyc02g085610.2.1	Tomato	nucleus	51.78	61.62
CDY24770	Canola	nucleus	56.8	61.34
AT4G36730.1	Thale cress	nucleus	57.1	61.27
CDY35476	Canola	nucleus	56.51	61.02
Bra010572.1-P	Field mustard	nucleus	55.62	60.06
CDX69240	Canola	nucleus	55.33	59.74
Bra011701.1-P	Field mustard	nucleus	55.33	59.74
CDX75592	Canola	nucleus	55.03	59.42
PGSC0003DMT400032960	Potato	nucleus	61.83	52.25
KRH07569	Soybean	nucleus	43.79	35.58
KRH74331	Soybean	nucleus	43.49	35.42
KRH39598	Soybean	nucleus	43.2	35.27
KRH45342	Soybean	nucleus	43.49	35.25
KRH68860	Soybean	nucleus	38.76	30.82
KRG97109	Soybean	nucleus	37.57	29.88
KRH06537	Soybean	nucleus	36.69	29.25
KRG89193	Soybean	nucleus	25.74	29.19
KRH47979	Soybean	nucleus	35.21	28.07

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:778124	EMBL:ACUP02000739	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G058800
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K7K6N5	EnsemblPlants:KRH69948	ProteinID:KRH69948
ProteinID:KRH69948.1	ProteinID:KRH69949.1	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002960DE3	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:5274914..5277526

Molecular Weight (calculated)

35640.0 Da

IEP (calculated)

5.503

GRAVY (calculated)

-0.826

Length

338 amino acids

Sequence
(BLAST)

001: MGAGEESTAK SSKVSSAAQQ ETPTALAYPD WSSSMQAYYA PGGTPPPFFA STVASPTPHP YLWGSQHPLM PPYGTPVPYP AIYPPGSIYA HPSMAVNPSI
101: VQQSTEIEGK GADGKDRDLS KKLKGTSANT GSKAGESGKA GSGSGNDGIS QSGESGSEGS SNASDENTNQ QESAAKKKGS FDLMLVDGAN AQNNSAGAIS
201: QSSVPGKPVV PMPATNLNIG MDLWNASSGG AEAAKMRHNQ SGAPGVALGD QWVQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQKRV ESLGGENQTL
301: RDELQRLSEE CEKLTSENNS IKEELERLCG PEAVANLG

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.