Factsheet for PGSC0003DMT400032960

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400047522

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	PGSC0003DMT400047522	AT1G32150.1	18315949
AT4G36730.1	PGSC0003DMT400047522	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085610.2.1	Tomato	nucleus	62.25	87.68
KRH08310	Soybean	nucleus	52.75	62.43
KRH69948	Soybean	nucleus	52.25	61.83
VIT_04s0023g01360.t01	Wine grape	nucleus	56.0	61.54
KRH76850	Soybean	nucleus	49.0	56.16
AT4G36730.1	Thale cress	nucleus	43.5	55.24
Bra011701.1-P	Field mustard	nucleus	41.75	53.35
CDX75592	Canola	nucleus	41.5	53.04
CDX69240	Canola	nucleus	41.25	52.72
KRH28623	Soybean	nucleus	48.25	52.3
CDY35476	Canola	nucleus	40.5	51.76
Bra010572.1-P	Field mustard	nucleus	40.25	51.44
CDY24770	Canola	nucleus	40.25	51.44
PGSC0003DMT400047522	Potato	nucleus	29.0	30.13
PGSC0003DMT400000266	Potato	nucleus	29.75	28.54
PGSC0003DMT400084203	Potato	nucleus	27.5	26.63

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102584143	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	UniProt:M1AYD6	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	EnsemblPlantsGene:PGSC0003DMG400012660
PGSC:PGSC0003DMG400012660	EnsemblPlants:PGSC0003DMT400032960	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF123
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002956791	InterPro:bZIP	SEG:seg	:

Description

G-box binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012660]

Coordinates

chr2:-:40831875..40837475

Molecular Weight (calculated)

43802.9 Da

IEP (calculated)

6.587

GRAVY (calculated)

-0.861

Length

400 amino acids

Sequence
(BLAST)

001: MFDQETPTAP SYPDWSSSMQ AYYSAGATPP FFASPVASPA PHPYMWGGQH PLMPPYGTPV PYPALYPPAG VYAHPNIATP APNIALANPE SNGKGPEGKD
101: RNSSKKLKVC SGGKAGDNGK VTSGSGNDGA TQSDESRSEG TSDTNDENDN NEFAANKKGS FDQMLADGAS AQNNPAKENH PTSIHGNPVT VPATNLNIGM
201: DVWNASAAGP GAIKLQPNAT GPVIGHEGRM NDQWIQEERE LKRQKRKQSN RESARRSRLR KQAECEELQR RVEALSHENH SLKDELQRLS EECEKLTSEN
301: NSIKAECEEL QRRVEALSHE NHSLKDELQR LSEECEKLTS ENNSIKVLYT FISIPLNFTL RGGPMVWAWD FHVGGLKFET PCQRKQGVCL LGRARRTGLA

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.