Factsheet for PGSC0003DMT400084203

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400047522

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	PGSC0003DMT400047522	AT1G32150.1	18315949
AT2G46270.1	PGSC0003DMT400047522	AT2G35530.1	18315949
AT4G01120.1	PGSC0003DMT400047522	AT1G32150.1	18315949
AT4G01120.1	PGSC0003DMT400047522	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050220.2.1	Tomato	nucleus	89.35	88.7
PGSC0003DMT400000266	Potato	nucleus	68.52	67.87
VIT_15s0046g01440.t01	Wine grape	nucleus	57.87	55.58
KRH68860	Soybean	nucleus	55.21	53.65
KRG97109	Soybean	nucleus	54.72	53.18
KRH47979	Soybean	nucleus	52.3	50.94
KRH06537	Soybean	nucleus	50.85	49.53
AT2G46270.1	Thale cress	nucleus	45.04	48.69
Bra004550.1-P	Field mustard	nucleus	43.83	47.76
Bra037382.1-P	Field mustard	nucleus	41.4	46.59
CDY48506	Canola	nucleus	41.16	46.58
CDY07176	Canola	nucleus	40.68	46.28
CDX95685	Canola	nucleus	33.17	45.67
AT4G01120.1	Thale cress	nucleus	39.47	45.28
CDY42029	Canola	nucleus	43.58	43.48
GSMUA_Achr6P32000_001	Banana	nucleus	38.98	42.71
CDX80004	Canola	golgi	44.07	41.08
Os05t0569300-01	Rice	nucleus	35.59	38.68
TraesCS1A01G409800.2	Wheat	nucleus	35.11	37.96
GSMUA_Achr9P05310_001	Banana	nucleus	37.29	37.02
Zm00001d039065_P006	Maize	nucleus	33.66	36.87
GSMUA_Achr1P05050_001	Banana	nucleus	38.01	36.85
EES18712	Sorghum	nucleus	33.9	36.65
TraesCS1D01G417100.1	Wheat	nucleus	34.87	35.82
TraesCS1B01G439800.1	Wheat	nucleus	34.62	35.48
Zm00001d040500_P001	Maize	nucleus	16.22	34.54
Zm00001d043992_P001	Maize	nucleus	31.23	34.22
Os01t0658900-01	Rice	nucleus	29.54	33.89
Zm00001d025638_P001	Maize	nucleus	15.5	33.51
Zm00001d043908_P001	Maize	nucleus	15.5	33.51
HORVU1Hr1G090030.11	Barley	nucleus, plastid	35.35	31.95
PGSC0003DMT400032960	Potato	nucleus	26.63	27.5
PGSC0003DMT400047522	Potato	nucleus	25.18	27.01
KXG33037	Sorghum	nucleus	30.51	25.4
HORVU1Hr1G089970.10	Barley	cytosol	20.58	22.97

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102579619	MapMan:15.5.4.1	ProteinID:AFW90637	ProteinID:AFW90637.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EMBL:JX576281	UniProt:M1D7J9	InterPro:MFMR
PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	EnsemblPlantsGene:PGSC0003DMG400033876	PGSC:PGSC0003DMG400033876	EnsemblPlants:PGSC0003DMT400084203
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002960705	RefSeq:XP_006345571.1	RefSeq:XP_015163426.1	InterPro:bZIP	SEG:seg	:

Description

TAF-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400033876]

Coordinates

chr5:+:44431024..44437677

Molecular Weight (calculated)

44513.9 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.794

Length

413 amino acids

Sequence
(BLAST)

001: MGNIEDGKSS TPEKSFSTAP DQSNFHVYPD WAAMQAYYGH RVAVPPYVNP AVAPGHAPHP YMWGPLPPMM PPYGTPYAGV YAHGGVYPHP GVPIVSRPQA
101: HGMTSSPAVS QTMNTASLSM DASAKSSGNS DQGLMSQSKG FNGLGMSIGN FTVDNGDGTD HGPSQSGQTE GSSDGSNIHT AEVGEHRKKR SREATPNNSG
201: DRKSQRLCSP QRTKEVNGAS EKGIGNPGDI AEKLAGTTFS PIMTTTPLVK SSPTSRISPA VPGEVWLQNE HELKREKRKQ SNRESARRSR LRKQAEAEEL
301: AVRVQSLTSE NLALRSEINK FSEHSEKLKV ENAALMERLK NKLGQAKEVT LGMIDDKRLK PVSTADLLAR VNNNNGSFNR TNEDGEVHDS TSGAKLRQLL
401: DASPRTDHAV AAR

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.