Factsheet for Bra004550.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005335.1-P
Bra017316.1-P
Bra023012.1-P
Bra023243.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	Bra023243.1-P	AT1G32150.1	18315949
AT2G46270.1	Bra005335.1-P	AT2G35530.1	18315949
AT2G46270.1	Bra017316.1-P	AT2G35530.1	18315949
AT2G46270.1	Bra023012.1-P	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42029	Canola	nucleus	96.57	88.41
CDX80004	Canola	golgi	99.74	85.33
AT2G46270.1	Thale cress	nucleus	84.96	84.29
CDX95685	Canola	nucleus	65.44	82.67
KRG97109	Soybean	nucleus	56.73	50.59
KRH68860	Soybean	nucleus	56.46	50.35
VIT_15s0046g01440.t01	Wine grape	nucleus	56.99	50.23
Bra037382.1-P	Field mustard	nucleus	48.28	49.86
KRH06537	Soybean	nucleus	53.83	48.11
PGSC0003DMT400000266	Potato	nucleus	52.51	47.72
KRH47979	Soybean	nucleus	53.3	47.64
Solyc01g095460.2.1	Tomato	nucleus	52.24	47.37
PGSC0003DMT400084203	Potato	nucleus	47.76	43.83
Solyc05g050220.2.1	Tomato	nucleus	46.7	42.55
GSMUA_Achr6P32000_001	Banana	nucleus	38.79	38.99
Zm00001d039065_P006	Maize	nucleus	37.2	37.4
Os05t0569300-01	Rice	nucleus	37.47	37.37
TraesCS1A01G409800.2	Wheat	nucleus	37.2	36.91
GSMUA_Achr1P05050_001	Banana	nucleus	41.16	36.62
Os01t0658900-01	Rice	nucleus	34.56	36.39
EES18712	Sorghum	nucleus	36.41	36.13
Bra010572.1-P	Field mustard	nucleus	29.29	35.46
GSMUA_Achr9P05310_001	Banana	nucleus	38.79	35.34
Bra011701.1-P	Field mustard	nucleus	29.02	35.14
Zm00001d043992_P001	Maize	nucleus	34.83	35.01
TraesCS1D01G417100.1	Wheat	nucleus	36.94	34.83
TraesCS1B01G439800.1	Wheat	nucleus	36.41	34.24
Zm00001d040500_P001	Maize	nucleus	16.09	31.44
Zm00001d025638_P001	Maize	nucleus	15.83	31.41
Zm00001d043908_P001	Maize	nucleus	15.83	31.41
HORVU1Hr1G090030.11	Barley	nucleus, plastid	36.68	30.42
Bra023243.1-P	Field mustard	nucleus	25.86	27.84
Bra023012.1-P	Field mustard	nucleus	27.7	26.05
KXG33037	Sorghum	nucleus	34.04	26.01
Bra005335.1-P	Field mustard	nucleus	28.5	25.59
HORVU1Hr1G089970.10	Barley	cytosol	23.22	23.78
Bra017316.1-P	Field mustard	nucleus	12.93	18.56

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra004550	EnsemblPlants:Bra004550.1	EnsemblPlants:Bra004550.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0043565	GO:GO:0044212	InterPro:IPR004827	UniProt:M4CK16	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00025474B4	InterPro:bZIP	SEG:seg	:

Description

AT2G46270 (E=5e-143) GBF3 | GBF3 (G-BOX BINDING FACTOR 3); sequence-specific DNA binding / transcription factor

Coordinates

chrA05:-:770588..772519

Molecular Weight (calculated)

40809.3 Da

IEP (calculated)

9.885

GRAVY (calculated)

-1.054

Length

379 amino acids

Sequence
(BLAST)

001: MGKSEEPKVT KSDNKPSSPP ADQTNVHVYP DWAAMQAYYG PRVAMPPYYN SAMAAASGHP PPPYMWNPQH MMSPYGTPYA AVYPHGGGVY AHPGFPMGSQ
101: PHGQKGATPL TTPGTPLNID TPSKSTGNTE NGLMKKLKEF DGLAMSLGNG NNGDEGKRSR NSSETDGSSD GSDGNTTGAD EPKLKRSREG TPAKDEKKHL
201: VQSSSFRSVS QSSGDNNCVK PSVQGGGGAI VSAAGVSANS NPTFMSQSLA MVPPETWLQN ERELKRERRK QSNRESARRS RLRKQAETEE LARKVEALTA
301: ENMALRSELN QLNEKSNNLR GANATLLDKL KSSEPEKRVK SSGNGDDKNK KQGDNETNST SKLHQLLDTK PRADGVAAR

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.