CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84103
CDX84198
CDY12261
CDY22589
CDY31695
CDY32123
CDY40465
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	CDX84103	AT1G32150.1	18315949
AT2G46270.1	CDY12261	AT1G32150.1	18315949
AT2G46270.1	CDY22589	AT1G32150.1	18315949
AT2G46270.1	CDX84198	AT2G35530.1	18315949
AT2G46270.1	CDY31695	AT2G35530.1	18315949
AT2G46270.1	CDY32123	AT2G35530.1	18315949
AT2G46270.1	CDY40465	AT2G35530.1	18315949
AT2G46270.1	CDY65764	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004550.1-P	Field mustard	nucleus	85.33	99.74
CDY42029	Canola	nucleus	86.46	92.51
AT2G46270.1	Thale cress	nucleus	72.91	84.56
CDX95685	Canola	nucleus	56.21	83.0
KRG97109	Soybean	nucleus	48.31	50.35
KRH68860	Soybean	nucleus	48.08	50.12
VIT_15s0046g01440.t01	Wine grape	nucleus	48.53	50.0
CDY48506	Canola	nucleus	41.08	49.86
CDY07176	Canola	nucleus	40.86	49.86
KRH06537	Soybean	nucleus	45.82	47.88
PGSC0003DMT400000266	Potato	nucleus	44.92	47.72
KRH47979	Soybean	nucleus	45.37	47.41
Solyc01g095460.2.1	Tomato	nucleus	44.7	47.37
PGSC0003DMT400084203	Potato	nucleus	41.08	44.07
Solyc05g050220.2.1	Tomato	nucleus	40.18	42.79
GSMUA_Achr6P32000_001	Banana	nucleus	32.96	38.73
Zm00001d039065_P006	Maize	nucleus	31.83	37.4
Os05t0569300-01	Rice	nucleus	32.05	37.37
TraesCS1A01G409800.2	Wheat	nucleus	31.83	36.91
Os01t0658900-01	Rice	nucleus	29.57	36.39
GSMUA_Achr1P05050_001	Banana	nucleus	34.99	36.38
EES18712	Sorghum	nucleus	31.15	36.13
TraesCS1D01G417100.1	Wheat	nucleus	32.51	35.82
Zm00001d043992_P001	Maize	nucleus	30.25	35.54
CDY24770	Canola	nucleus	25.06	35.46
TraesCS1B01G439800.1	Wheat	nucleus	32.05	35.24
CDY35476	Canola	nucleus	24.83	35.14
GSMUA_Achr9P05310_001	Banana	nucleus	32.96	35.1
CDX69240	Canola	nucleus	24.61	34.82
CDX75592	Canola	nucleus	24.61	34.82
HORVU1Hr1G090030.11	Barley	nucleus, plastid	32.51	31.51
Zm00001d040500_P001	Maize	nucleus	13.77	31.44
Zm00001d043908_P001	Maize	nucleus	13.54	31.41
Zm00001d025638_P001	Maize	nucleus	13.54	31.41
CDY32123	Canola	nucleus	9.93	28.76
CDY12261	Canola	nucleus	24.38	28.35
CDY22589	Canola	nucleus	23.93	27.68
CDY31695	Canola	nucleus	24.15	27.09
KXG33037	Sorghum	nucleus	29.35	26.21
CDY65764	Canola	nucleus	23.7	26.18
CDY40465	Canola	nucleus	17.61	26.0
CDX84103	Canola	nucleus, plastid	18.74	23.99
HORVU1Hr1G089970.10	Barley	cytosol	19.86	23.78
CDX84198	Canola	nucleus	24.61	23.75

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078CVG3	EnsemblPlants:CDX80004	ProteinID:CDX80004	ProteinID:CDX80004.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00132877001	InterPro:IPR004827	InterPro:MFMR
PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	TMHMM:TMhelix	UniParc:UPI0004EEBB31	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaA05g01520D

Coordinates

chrLK031819:+:1250875..1254903

Molecular Weight (calculated)

48076.4 Da

IEP (calculated)

10.166

GRAVY (calculated)

-0.805

Length

443 amino acids

Sequence
(BLAST)

001: MPIFNWRGLF LVRWIVSNIP AVGFEAVVGI VGPNVFFFSR FVSLSSGYRF LQRQLLLKCG NVKTMGKSEE PKVTKSDNKP SSPPADQTNV HVYPDWAAMQ
101: AYYGPRVAMP PYYNSAMAAA SGHPPPPYMW NPQHMMSPYG TPYAAVYPHG GGVYAHPGFP MGSQPQGQKG ATPLTTPGTP LNIDTPSKST GNTENGLMKK
201: LKEFDGLAMS LGNGNNGDEG KRSRNSSETD GSSDGSDGNT TGADEPKLKR SREGTPAKDE KKHLVQSSSF RSVSQSSGDN NCVKPSVQGG GGAIVSAAGV
301: SANSNPTFMS QSLAMVPPET WLQNERELKR ERRKQSNRES ARRSRLRKQA ETEELARKVE ALTAENMALR SELNQLNEKS NNLRGANATL LDKLKSSEPE
401: KRVKSSGNGD DKNKKQGDNE TNSTSKLHQL LDTKPRADGV AAR

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.