CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69240
CDX75592
CDX80004
CDX84103
CDX84198
CDX95685
CDY07176
CDY12261
CDY22589
CDY24770
CDY31695
CDY32123
CDY35476
CDY40465
CDY42029
CDY48506
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35530.1	CDX84103	AT1G32150.1	18315949
AT2G35530.1	CDY12261	AT1G32150.1	18315949
AT2G35530.1	CDY22589	AT1G32150.1	18315949
AT2G35530.1	CDX84198	AT2G35530.1	18315949
AT2G35530.1	CDY31695	AT2G35530.1	18315949
AT2G35530.1	CDY32123	AT2G35530.1	18315949
AT2G35530.1	CDY40465	AT2G35530.1	18315949
AT2G35530.1	CDY65764	AT2G35530.1	18315949
AT2G35530.1	CDX80004	AT2G46270.1	18315949
AT2G35530.1	CDX95685	AT2G46270.1	18315949
AT2G35530.1	CDY42029	AT2G46270.1	18315949
AT2G35530.1	CDY07176	AT4G01120.1	18315949
AT2G35530.1	CDY48506	AT4G01120.1	18315949
AT2G35530.1	CDX69240	AT4G36730.1	18315949
AT2G35530.1	CDX75592	AT4G36730.1	18315949
AT2G35530.1	CDY24770	AT4G36730.1	18315949
AT2G35530.1	CDY35476	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017316.1-P	Field mustard	nucleus	75.33	85.61
CDY31695	Canola	nucleus	79.67	60.51
AT2G35530.1	Thale cress	nucleus	82.33	60.39
CDY65764	Canola	nucleus	70.33	52.62
CDY12261	Canola	nucleus	66.0	51.97
CDX84198	Canola	nucleus	79.0	51.63
CDY22589	Canola	nucleus	64.33	50.39
CDY32123	Canola	nucleus	22.33	43.79
Solyc08g005290.2.1	Tomato	nucleus	57.33	43.32
VIT_02s0012g02250.t01	Wine grape	nucleus	59.33	43.1
KRH39598	Soybean	nucleus	58.67	42.51
GSMUA_Achr4P11610_001	Banana	nucleus	41.67	41.95
KRH74331	Soybean	nucleus	58.0	41.93
Solyc08g076100.2.1	Tomato	nucleus	57.0	41.81
KRH07569	Soybean	nucleus	56.67	40.87
KRH45342	Soybean	nucleus	56.33	40.53
PGSC0003DMT400047522	Potato	nucleus	51.67	40.26
Zm00001d015118_P001	Maize	nucleus	36.33	37.59
TraesCS5A01G115300.2	Wheat	nucleus	48.33	37.37
TraesCS5B01G122000.2	Wheat	nucleus	48.33	37.37
TraesCS5D01G124600.1	Wheat	nucleus	48.33	37.37
GSMUA_Achr5P14150_001	Banana	nucleus	50.0	37.31
GSMUA_Achr4P04530_001	Banana	nucleus	51.0	37.05
Zm00001d039206_P001	Maize	nucleus	25.67	37.02
KXG23316	Sorghum	nucleus	47.33	36.88
HORVU5Hr1G029130.19	Barley	nucleus	46.67	35.99
Zm00001d041142_P010	Maize	nucleus	45.33	35.6
GSMUA_Achr4P18980_001	Banana	nucleus	47.67	35.48
GSMUA_AchrUn_...	Banana	nucleus	44.0	34.65
GSMUA_Achr6P01090_001	Banana	nucleus	47.0	34.14
Zm00001d024041_P002	Maize	nucleus	38.67	33.72
Os12t0233800-02	Rice	nucleus	33.67	32.48
Zm00001d053967_P001	Maize	nucleus	33.33	31.85
EES04440	Sorghum	nucleus	37.0	31.71
TraesCSU01G019200.1	Wheat	nucleus	36.33	31.59
TraesCS6A01G087400.2	Wheat	nucleus	36.33	31.41
TraesCS6B01G110100.1	Wheat	nucleus	36.33	31.23
Os02t0128200-01	Rice	nucleus	36.0	31.12
HORVU6Hr1G016240.10	Barley	nucleus	36.33	30.88
CDX75592	Canola	nucleus	32.0	30.67
CDX69240	Canola	nucleus	31.67	30.35
GSMUA_Achr4P27400_001	Banana	nucleus	40.67	29.68
CDY24770	Canola	nucleus	30.33	29.07
CDX84103	Canola	nucleus, plastid	33.0	28.61
CDY35476	Canola	nucleus	29.67	28.43
CDX95685	Canola	nucleus	24.67	24.67
CDY48506	Canola	nucleus	24.33	20.0
CDY07176	Canola	nucleus	24.0	19.83
CDY42029	Canola	nucleus	25.67	18.6
CDX80004	Canola	golgi	26.0	17.61

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078HPI7	UniProt:A0A078HPI7	EnsemblPlants:CDY40465	ProteinID:CDY40465
ProteinID:CDY40465.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00069686001	InterPro:IPR004827
PFAM:PF00170	PFAM:PF16596	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0004EE7417	InterPro:bZIP	SEG:seg	:	:

Description

BnaA04g20520DBnaA04g20520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPI7]

Coordinates

chrLK032470:+:297986..300376

Molecular Weight (calculated)

32218.7 Da

IEP (calculated)

5.837

GRAVY (calculated)

-0.762

Length

300 amino acids

Sequence
(BLAST)

001: MPPYGTPTHP YVTMYPPGGM YGHPSIPPGS YPYSPYAMPS PNGMTEASGN TTGGTEVEAK QSEMKEKLPI KRSRGGSLGS LNMITGKNSG ASANGAYSKS
101: AMIIMICDSD LLFNPLYNSG SGGSANGPRD GSVGSQTVPV MPMTAAGVPA PPTNLNIGMD YWGAPTSAST PVHGVVAPVS RDGGRSQPWL QDDREVKRRR
201: RKQSNRESAR ISRLRKQAEC DELAQRAEVL NEENASLREE INKLRSQCEE LTSENTSLKD QLLSFPTLEG VAMDKDEQEP PDTNQTGVAE TKADSYKDSK

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.