CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84103
CDX84198
CDY12261
CDY22589
CDY31695
CDY32123
CDY40465
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	CDX84103	AT1G32150.1	18315949
AT4G36730.1	CDY12261	AT1G32150.1	18315949
AT4G36730.1	CDY22589	AT1G32150.1	18315949
AT4G36730.1	CDX84198	AT2G35530.1	18315949
AT4G36730.1	CDY31695	AT2G35530.1	18315949
AT4G36730.1	CDY32123	AT2G35530.1	18315949
AT4G36730.1	CDY40465	AT2G35530.1	18315949
AT4G36730.1	CDY65764	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24770	Canola	nucleus	97.12	97.12
Bra010572.1-P	Field mustard	nucleus	96.17	96.17
CDX69240	Canola	nucleus	87.86	87.86
CDX75592	Canola	nucleus	87.22	87.22
AT4G36730.1	Thale cress	nucleus	84.03	83.49
KRH08310	Soybean	nucleus	61.34	56.8
KRH69948	Soybean	nucleus	61.02	56.51
Solyc02g062950.2.1	Tomato	nucleus	58.15	53.37
VIT_04s0023g01360.t01	Wine grape	nucleus	61.02	52.47
KRH76850	Soybean	nucleus	54.63	49.0
Solyc02g085610.2.1	Tomato	nucleus	44.09	48.59
KRH28623	Soybean	nucleus	54.95	46.61
VIT_18s0001g12120.t01	Wine grape	nucleus	56.87	44.72
PGSC0003DMT400032960	Potato	nucleus	51.76	40.5
CDY12261	Canola	nucleus	40.26	33.07
CDY22589	Canola	nucleus	39.3	32.11
CDY31695	Canola	nucleus	39.94	31.65
CDX84103	Canola	nucleus, plastid	33.55	30.35
CDY40465	Canola	nucleus	28.43	29.67
CDY07176	Canola	nucleus	33.87	29.2
CDY65764	Canola	nucleus	37.06	28.93
CDY48506	Canola	nucleus	33.55	28.77
CDY32123	Canola	nucleus	14.06	28.76
CDX84198	Canola	nucleus	39.94	27.23
CDX95685	Canola	nucleus	25.56	26.67
CDY42029	Canola	nucleus	34.82	26.33
CDX80004	Canola	golgi	35.14	24.83
KRG89193	Soybean	nucleus	22.36	23.49

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078HCJ7	UniProt:A0A078HCJ7	EnsemblPlants:CDY35476	ProteinID:CDY35476
ProteinID:CDY35476.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00058500001	InterPro:IPR004827
InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EEE7E3	InterPro:bZIP	SEG:seg

Description

BnaC03g61840DBnaC03g61840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCJ7]

Coordinates

chrLK032352:-:364036..366318

Molecular Weight (calculated)

33731.0 Da

IEP (calculated)

6.264

GRAVY (calculated)

-1.040

Length

313 amino acids

Sequence
(BLAST)

001: MGTSEENTPF KPSKPASSAQ DTPPTPYADW SNSMQAYYGG GGTPSPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGTVYAH PGMPMPQASG
101: PTNTEIVKAQ APGKKPKGNS KRKSGGGEKV LSGSGNDAVS QSEESVAAGS SDENDDNANH QEQGSLRKPS FGQMLADASS QSNTTGEIQG SMPMKPVAPG
201: TNLNMGMELW SSQTGVAVKD ERELKRQKRK QSNRESARRS RLRKQAECEQ LQQRVESLTS ENQSLRDELQ RLSGECEKLK TENNTIQDEL VRVHGPEAVA
301: NLEQNADGSK DGE

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.