CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69240
CDX75592
CDX80004
CDX84103
CDX84198
CDX95685
CDY07176
CDY12261
CDY22589
CDY24770
CDY31695
CDY32123
CDY35476
CDY40465
CDY42029
CDY48506
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35530.1	CDX84103	AT1G32150.1	18315949
AT2G35530.1	CDY12261	AT1G32150.1	18315949
AT2G35530.1	CDY22589	AT1G32150.1	18315949
AT2G35530.1	CDX84198	AT2G35530.1	18315949
AT2G35530.1	CDY31695	AT2G35530.1	18315949
AT2G35530.1	CDY32123	AT2G35530.1	18315949
AT2G35530.1	CDY40465	AT2G35530.1	18315949
AT2G35530.1	CDY65764	AT2G35530.1	18315949
AT2G35530.1	CDX80004	AT2G46270.1	18315949
AT2G35530.1	CDX95685	AT2G46270.1	18315949
AT2G35530.1	CDY42029	AT2G46270.1	18315949
AT2G35530.1	CDY07176	AT4G01120.1	18315949
AT2G35530.1	CDY48506	AT4G01120.1	18315949
AT2G35530.1	CDX69240	AT4G36730.1	18315949
AT2G35530.1	CDX75592	AT4G36730.1	18315949
AT2G35530.1	CDY24770	AT4G36730.1	18315949
AT2G35530.1	CDY35476	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005335.1-P	Field mustard	nucleus	98.99	92.65
AT2G35530.1	Thale cress	nucleus	87.85	84.84
CDX84198	Canola	nucleus	96.96	83.44
CDY40465	Canola	nucleus	60.51	79.67
CDY65764	Canola	nucleus	75.19	74.06
CDY12261	Canola	nucleus	66.58	69.03
CDY22589	Canola	nucleus	65.57	67.62
VIT_02s0012g02250.t01	Wine grape	nucleus	63.54	60.77
Solyc08g005290.2.1	Tomato	nucleus	60.0	59.7
KRH39598	Soybean	nucleus	62.03	59.18
KRH74331	Soybean	nucleus	61.27	58.31
Solyc08g076100.2.1	Tomato	nucleus	59.75	57.7
KRH45342	Soybean	nucleus	60.0	56.83
KRH07569	Soybean	nucleus	59.75	56.73
PGSC0003DMT400047522	Potato	nucleus	53.16	54.55
GSMUA_Achr5P14150_001	Banana	nucleus	53.42	52.49
GSMUA_Achr4P04530_001	Banana	nucleus	54.43	52.06
TraesCS5A01G115300.2	Wheat	nucleus	50.89	51.8
TraesCS5B01G122000.2	Wheat	nucleus	50.89	51.8
TraesCS5D01G124600.1	Wheat	nucleus	50.89	51.8
KXG23316	Sorghum	nucleus	50.13	51.43
Zm00001d041142_P010	Maize	nucleus	48.86	50.52
GSMUA_Achr4P11610_001	Banana	nucleus	37.72	50.0
Os12t0233800-02	Rice	nucleus	38.73	49.2
GSMUA_AchrUn_...	Banana	nucleus	47.34	49.08
CDX84103	Canola	nucleus, plastid	42.78	48.84
Zm00001d039206_P001	Maize	nucleus	25.57	48.56
GSMUA_Achr4P18980_001	Banana	nucleus	49.11	48.14
GSMUA_Achr6P01090_001	Banana	nucleus	49.62	47.46
TraesCS6A01G087400.2	Wheat	nucleus	40.76	46.4
TraesCSU01G019200.1	Wheat	nucleus	40.51	46.38
TraesCS6B01G110100.1	Wheat	nucleus	40.76	46.13
Os02t0128200-01	Rice	nucleus	40.51	46.11
EES04440	Sorghum	nucleus	40.76	46.0
Zm00001d015118_P001	Maize	nucleus	33.42	45.52
GSMUA_Achr4P27400_001	Banana	nucleus	47.09	45.26
HORVU6Hr1G016240.10	Barley	nucleus	40.25	45.04
HORVU5Hr1G029130.19	Barley	nucleus	44.3	44.99
CDY32123	Canola	nucleus	16.96	43.79
Zm00001d024041_P002	Maize	nucleus	37.22	42.73
Zm00001d053967_P001	Maize	nucleus	33.92	42.68
CDX69240	Canola	nucleus	32.41	40.89
CDX75592	Canola	nucleus	32.15	40.58
CDY24770	Canola	nucleus	31.65	39.94
CDY35476	Canola	nucleus	31.65	39.94
CDY48506	Canola	nucleus	25.57	27.67
CDX95685	Canola	nucleus	21.01	27.67
CDY07176	Canola	nucleus	25.32	27.55
CDY42029	Canola	nucleus	26.84	25.6
CDX80004	Canola	golgi	27.09	24.15

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078GZ09	UniProt:A0A078GZ09	EnsemblPlants:CDY31695	ProteinID:CDY31695
ProteinID:CDY31695.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00050310001	InterPro:IPR004827
InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EE6BE1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaA05g08520DBnaA05g08520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ09]

Coordinates

chrLK032277:-:313525..316670

Molecular Weight (calculated)

42085.5 Da

IEP (calculated)

5.479

GRAVY (calculated)

-0.996

Length

395 amino acids

Sequence
(BLAST)

001: MASNEMEKSS KEKEPTTPPP PPPSSQEPSS AVSAGMATPD WSGFQAYSPM PPHGFVASSP QPHPYMWGVQ HMNMMPPYGT PPHPYVAMYP PGGMYGHPSM
101: PPGSYPYSPY AMPSPNGMTE ASGNTTGGTE GGDAKQSEVK EKLPIKRSRG SLGSLNMITG KNNEPGKNSG ASANGAYSKS GESASDGSSE GSDANSQNGS
201: GSGQERKDEN GDSANAPRNG TPVSQTVPIM PMPAAGPPTN LNIGMEYWGA PTSAAIPGMH GKASAPVPGV AAPVSRDGGH SQPWLQDDRE IKRQKRKQSN
301: RESARRSRLR KQAECDELAQ RAELLNEENA TLRAEINRLK SQCDELTSEN TSLKDQLLSF PSLEGINMDK DDQEPETYQT GVTERKADDT YKSST

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.