Factsheet for GSMUA_AchrUn_randomP02860_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P05050_001
GSMUA_Achr4P04530_001
GSMUA_Achr4P11610_001
GSMUA_Achr4P18980_001
GSMUA_Achr4P27400_001
GSMUA_Achr5P14150_001
GSMUA_Achr6P01090_001
GSMUA_Achr6P32000_001
GSMUA_Achr9P05310_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P04530_001	Banana	nucleus	61.94	57.14
GSMUA_Achr4P11610_001	Banana	nucleus	43.31	55.37
KXG23316	Sorghum	nucleus	54.86	54.29
Zm00001d041142_P010	Maize	nucleus	54.33	54.19
TraesCS5B01G122000.2	Wheat	nucleus	54.07	53.09
TraesCS5A01G115300.2	Wheat	nucleus	53.81	52.84
TraesCS5D01G124600.1	Wheat	nucleus	53.81	52.84
VIT_02s0012g02250.t01	Wine grape	nucleus	56.17	51.82
GSMUA_Achr5P14150_001	Banana	nucleus	54.33	51.49
Os12t0233800-02	Rice	nucleus	40.42	49.52
KRH39598	Soybean	nucleus	53.28	49.03
GSMUA_Achr6P01090_001	Banana	nucleus	53.02	48.91
Solyc08g005290.2.1	Tomato	nucleus	50.92	48.87
GSMUA_Achr4P18980_001	Banana	nucleus	51.44	48.64
KRH74331	Soybean	nucleus	52.76	48.43
Solyc08g076100.2.1	Tomato	nucleus	51.44	47.92
AT1G32150.1	Thale cress	nucleus	48.56	47.56
CDY31695	Canola	nucleus	49.08	47.34
TraesCSU01G019200.1	Wheat	nucleus	42.78	47.25
KRH45342	Soybean	nucleus	51.44	47.0
TraesCS6A01G087400.2	Wheat	nucleus	42.78	46.97
KRH07569	Soybean	nucleus	50.92	46.63
EES04440	Sorghum	nucleus	42.78	46.57
GSMUA_Achr4P27400_001	Banana	nucleus	50.13	46.47
HORVU6Hr1G016240.10	Barley	nucleus	43.04	46.46
TraesCS6B01G110100.1	Wheat	nucleus	42.26	46.13
Os02t0128200-01	Rice	nucleus	41.99	46.11
HORVU5Hr1G029130.19	Barley	nucleus	46.98	46.02
AT2G35530.1	Thale cress	nucleus	49.34	45.97
Zm00001d053967_P001	Maize	nucleus	37.53	45.54
PGSC0003DMT400047522	Potato	nucleus	45.93	45.45
Zm00001d039206_P001	Maize	nucleus	24.67	45.19
Zm00001d015118_P001	Maize	nucleus	34.38	45.17
CDY12261	Canola	nucleus	44.62	44.62
Bra005335.1-P	Field mustard	nucleus	48.82	44.08
CDY40465	Canola	nucleus	34.65	44.0
Bra023243.1-P	Field mustard	nucleus	40.42	43.75
Zm00001d024041_P002	Maize	nucleus	39.37	43.6
CDY22589	Canola	nucleus	43.83	43.6
Bra023012.1-P	Field mustard	nucleus	44.09	41.69
CDY65764	Canola	nucleus	43.83	41.65
CDX84198	Canola	nucleus	49.34	40.96
CDX84103	Canola	nucleus, plastid	34.12	37.57
Bra017316.1-P	Field mustard	nucleus	23.62	34.09
CDY32123	Canola	nucleus	13.12	32.68
GSMUA_Achr6P00170_001	Banana	nucleus	29.92	30.4
GSMUA_Achr6P32000_001	Banana	nucleus	29.13	29.44
GSMUA_Achr9P09280_001	Banana	nucleus	7.09	29.03
GSMUA_Achr4P33130_001	Banana	nucleus	27.82	28.8
GSMUA_Achr9P05310_001	Banana	nucleus	30.71	28.12
GSMUA_Achr1P05050_001	Banana	nucleus	29.66	26.53

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG02860_001
EnsemblPlants:GSMUA_AchrUn_randomP02860_001	EnsemblPlants:GSMUA_AchrUn_randomT02860_001	InterPro:IPR004827	UniProt:M0U5U8	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000296BA8E	InterPro:bZIP	SEG:seg	:

Description

Putative Transcription factor HBP-1a [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02860_001]

Coordinates

chrchrUn_random:-:14290788..14295801

Molecular Weight (calculated)

40962.4 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.941

Length

381 amino acids

Sequence
(BLAST)

001: MGSGEGEASA KSPKPLAGQE QSPTTSSAAA VSVYPDWSNF QACPPIPPHG LFPSPVPSSP QAYPYMWGAP HLMPPYGTPL PPYLTYPPRG LYSHPSVPPG
101: LRPFGPFAMS TTNMNAENSG VVPSSMEMDG KSCKGKEKGP TKRSKGGCSS SNMISEKNNS ETCKSSGPPA NEVSQSGDST SDSSSEEESD DTSQNDSQPK
201: TSGGGESFDD QAPSQAMMSH TRAVMPMPAA SAPGGVVGPA TNLNIGMEYW AASSLSHIPS IHGKMPTTAV GGAVAPSAPS KHWLQDERER KRQRRKQSNR
301: EAARRSRMRK QAEFEELANR AETLNEENTS LRTELNRIKS EYEHLLSENN SLKEKLGEVQ KETQEPGFER NDQPLGKENP K

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.