Factsheet for GSMUA_Achr4P11610_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P05050_001
GSMUA_Achr4P04530_001
GSMUA_Achr4P11610_001
GSMUA_Achr4P18980_001
GSMUA_Achr4P27400_001
GSMUA_Achr5P14150_001
GSMUA_Achr6P01090_001
GSMUA_Achr6P32000_001
GSMUA_Achr9P05310_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P04530_001	Banana	nucleus	83.56	60.29
Zm00001d015118_P001	Maize	nucleus	47.32	48.62
Zm00001d039206_P001	Maize	nucleus	31.88	45.67
KXG23316	Sorghum	nucleus	56.38	43.64
GSMUA_AchrUn_...	Banana	nucleus	55.37	43.31
TraesCSU01G019200.1	Wheat	nucleus	49.33	42.61
Zm00001d041142_P010	Maize	nucleus	54.36	42.41
TraesCS6A01G087400.2	Wheat	nucleus	49.33	42.36
TraesCS6B01G110100.1	Wheat	nucleus	49.33	42.12
Os02t0128200-01	Rice	nucleus	48.66	41.79
TraesCS5D01G124600.1	Wheat	nucleus	54.36	41.75
TraesCS5B01G122000.2	Wheat	nucleus	54.36	41.75
EES04440	Sorghum	nucleus	48.99	41.71
CDY40465	Canola	nucleus	41.95	41.67
VIT_02s0012g02250.t01	Wine grape	nucleus	57.72	41.65
TraesCS5A01G115300.2	Wheat	nucleus	54.03	41.49
HORVU6Hr1G016240.10	Barley	nucleus	48.99	41.36
GSMUA_Achr5P14150_001	Banana	nucleus	54.7	40.55
KRH74331	Soybean	nucleus	56.38	40.48
HORVU5Hr1G029130.19	Barley	nucleus	52.68	40.36
KRH39598	Soybean	nucleus	56.04	40.34
Solyc08g005290.2.1	Tomato	nucleus	53.02	39.8
KRH45342	Soybean	nucleus	54.7	39.09
Zm00001d024041_P002	Maize	nucleus	44.97	38.95
KRH07569	Soybean	nucleus	54.03	38.7
Solyc08g076100.2.1	Tomato	nucleus	53.02	38.63
GSMUA_Achr6P01090_001	Banana	nucleus	53.02	38.26
GSMUA_Achr4P18980_001	Banana	nucleus	51.34	37.97
Zm00001d053967_P001	Maize	nucleus	39.93	37.9
AT2G35530.1	Thale cress	nucleus	52.01	37.9
CDY12261	Canola	nucleus	48.32	37.8
CDY31695	Canola	nucleus	50.0	37.72
AT1G32150.1	Thale cress	nucleus	48.66	37.28
CDY22589	Canola	nucleus	47.32	36.81
GSMUA_Achr4P27400_001	Banana	nucleus	49.66	36.01
Bra023243.1-P	Field mustard	nucleus	42.28	35.8
Bra005335.1-P	Field mustard	nucleus	49.66	35.07
Os12t0233800-02	Rice	nucleus	36.58	35.05
PGSC0003DMT400047522	Potato	nucleus	44.97	34.81
CDY65764	Canola	nucleus	46.64	34.66
Bra023012.1-P	Field mustard	nucleus	45.97	33.99
GSMUA_Achr9P09280_001	Banana	nucleus	10.4	33.33
CDX84198	Canola	nucleus	50.67	32.9
CDY32123	Canola	nucleus	15.77	30.72
Bra017316.1-P	Field mustard	nucleus	25.5	28.79
CDX84103	Canola	nucleus, plastid	28.86	24.86
GSMUA_Achr6P00170_001	Banana	nucleus	30.87	24.53
GSMUA_Achr6P32000_001	Banana	nucleus	30.87	24.4
GSMUA_Achr4P33130_001	Banana	nucleus	28.52	23.1
GSMUA_Achr9P05310_001	Banana	nucleus	29.19	20.91
GSMUA_Achr1P05050_001	Banana	nucleus	29.53	20.66

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G11610_001
EnsemblPlants:GSMUA_Achr4P11610_001	EnsemblPlants:GSMUA_Achr4T11610_001	InterPro:IPR004827	UniProt:M0SN26	PFAM:PF00170	PFAM:PF16596
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF354	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0002965F51	InterPro:bZIP	SEG:seg	:	:	:

Description

Transcription factor HBP-1a [Source:GMGC_GENE;Acc:GSMUA_Achr4G11610_001]

Coordinates

chr4:-:8371101..8375455

Molecular Weight (calculated)

31494.1 Da

IEP (calculated)

5.626

GRAVY (calculated)

-0.912

Length

298 amino acids

Sequence
(BLAST)

001: MYPPGGLYSH PSIPPGAHPF SPYAMASPSS NIEASGTAPG VDIDGKNNSE PGKLSGQPAN GAFSQSGESG SESSSEGSDA NSQNDSHPKT TGGHESLGAE
101: ASQSGSQNGV TRTPSQAMLS HPMSMVPMPA TAPGAVAGPT TNLNIGMDYW GAPSSSPIPM HGKIPATAVG GAAVPGAPSD IWLQDERELK RQRRKQSNRE
201: SARRSRLRKQ AEYEELAQRA EALREDNASL RAELTRINKD YEHLLSQNTL LKEKLGEAKQ GTEDQTLDRK EQHSGDGPSR NLDTEAQTAE TEQVRSGV

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.