Factsheet for GSMUA_Achr6P01090_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P05050_001
GSMUA_Achr4P04530_001
GSMUA_Achr4P11610_001
GSMUA_Achr4P18980_001
GSMUA_Achr4P27400_001
GSMUA_Achr5P14150_001
GSMUA_Achr6P01090_001
GSMUA_Achr6P32000_001
GSMUA_Achr9P05310_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT1G32150.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT1G32150.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT1G32150.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT1G32150.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT2G35530.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT2G35530.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT2G46270.1	18315949
AT2G35530.1	GSMUA_Achr1P05050_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr6P32000_001	AT4G01120.1	18315949
AT2G35530.1	GSMUA_Achr9P05310_001	AT4G01120.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P14150_001	Banana	nucleus	74.33	76.37
GSMUA_Achr4P18980_001	Banana	nucleus	69.25	70.97
GSMUA_Achr4P27400_001	Banana	nucleus	69.49	69.83
GSMUA_Achr4P04530_001	Banana	nucleus	58.11	58.11
VIT_02s0012g02250.t01	Wine grape	nucleus	57.63	57.63
KXG23316	Sorghum	nucleus	51.82	55.58
TraesCS5A01G115300.2	Wheat	nucleus	52.06	55.41
KRH39598	Soybean	nucleus	55.45	55.31
Solyc08g005290.2.1	Tomato	nucleus	53.03	55.16
TraesCS5B01G122000.2	Wheat	nucleus	51.82	55.15
Solyc08g076100.2.1	Tomato	nucleus	54.48	55.01
TraesCS5D01G124600.1	Wheat	nucleus	51.57	54.9
KRH74331	Soybean	nucleus	54.72	54.46
KRH45342	Soybean	nucleus	54.24	53.72
Zm00001d041142_P010	Maize	nucleus	49.64	53.66
KRH07569	Soybean	nucleus	53.75	53.37
GSMUA_Achr4P11610_001	Banana	nucleus	38.26	53.02
GSMUA_AchrUn_...	Banana	nucleus	48.91	53.02
Os12t0233800-02	Rice	nucleus	39.23	52.09
AT1G32150.1	Thale cress	nucleus	48.67	51.67
CDY12261	Canola	nucleus	47.22	51.18
EES04440	Sorghum	nucleus	43.1	50.86
Zm00001d015118_P001	Maize	nucleus	35.59	50.69
PGSC0003DMT400047522	Potato	nucleus	47.22	50.65
Zm00001d053967_P001	Maize	nucleus	38.5	50.64
Zm00001d039206_P001	Maize	nucleus	25.42	50.48
Os02t0128200-01	Rice	nucleus	42.37	50.43
CDY22589	Canola	nucleus	46.49	50.13
AT2G35530.1	Thale cress	nucleus	49.15	49.63
CDY31695	Canola	nucleus	47.46	49.62
TraesCSU01G019200.1	Wheat	nucleus	41.4	49.57
Bra023243.1-P	Field mustard	nucleus	42.13	49.43
TraesCS6A01G087400.2	Wheat	nucleus	41.16	48.99
TraesCS6B01G110100.1	Wheat	nucleus	41.16	48.71
HORVU6Hr1G016240.10	Barley	nucleus	41.4	48.44
CDY40465	Canola	nucleus	34.14	47.0
Bra005335.1-P	Field mustard	nucleus	47.22	46.21
HORVU5Hr1G029130.19	Barley	nucleus	42.62	45.24
Zm00001d024041_P002	Maize	nucleus	37.05	44.48
CDY65764	Canola	nucleus	43.1	44.39
Bra023012.1-P	Field mustard	nucleus	42.62	43.67
CDX84198	Canola	nucleus	47.46	42.7
CDX84103	Canola	nucleus, plastid	32.93	39.31
Bra017316.1-P	Field mustard	nucleus	24.21	37.88
GSMUA_Achr9P09280_001	Banana	nucleus	7.75	34.41
CDY32123	Canola	nucleus	12.35	33.33
GSMUA_Achr6P32000_001	Banana	nucleus	30.27	33.16
GSMUA_Achr4P33130_001	Banana	nucleus	29.54	33.15
GSMUA_Achr6P00170_001	Banana	nucleus	30.02	33.07
GSMUA_Achr9P05310_001	Banana	nucleus	30.27	30.05
GSMUA_Achr1P05050_001	Banana	nucleus	30.27	29.34

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G01090_001	EnsemblPlants:GSMUA_Achr6P01090_001	EnsemblPlants:GSMUA_Achr6T01090_001	InterPro:IPR004827
UniProt:M0T357	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000294E67F
InterPro:bZIP	SEG:seg	:	:	:	:

Description

Putative Transcription factor HBP-1a [Source:GMGC_GENE;Acc:GSMUA_Achr6G01090_001]

Coordinates

chr6:+:712888..718545

Molecular Weight (calculated)

44394.2 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.870

Length

413 amino acids

Sequence
(BLAST)

001: MGGSETDSKG PKTSAVQEQP PATSSNPSAS LCPDWSGFQA YSQIPPHGFF HSPIVSSPQA HPYMWGPQHL MPPYGTPPPP YVMYPHGIYA HPSTPPGLHP
101: FSPYAMTSPN GNAEAHGSIP ASTEGDARSS EGKERNAIQK LKGSFGSLNM VTEKNKNELD KTSGAVNGIF SQSGDSGSEN SSEGSDANSK NDSEPKTGGR
201: HEPLDETSQN GTSGIATAST QTKSHQTVPV MPILAAGLPG VVAGPTTNLN IGLDYWVGPT PSVNPPVYGK VPATVASGAT VTSTLVGGNE KVASEIWLQD
301: ERELKRQRRK QSNRESARRS RLRKQVEYEE LAQRVEVLKE ENTALRAEVD RIRKEYDQLV AQNASLKERT GQTTKEKEDL VIKESSQYAD DNARRSLSSE
401: PQEGQSDSKQ SGK

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.