CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69240
CDX75592
CDX80004
CDX84103
CDX84198
CDX95685
CDY07176
CDY12261
CDY22589
CDY24770
CDY31695
CDY32123
CDY35476
CDY40465
CDY42029
CDY48506
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35530.1	CDX84103	AT1G32150.1	18315949
AT2G35530.1	CDY12261	AT1G32150.1	18315949
AT2G35530.1	CDY22589	AT1G32150.1	18315949
AT2G35530.1	CDX84198	AT2G35530.1	18315949
AT2G35530.1	CDY31695	AT2G35530.1	18315949
AT2G35530.1	CDY32123	AT2G35530.1	18315949
AT2G35530.1	CDY40465	AT2G35530.1	18315949
AT2G35530.1	CDY65764	AT2G35530.1	18315949
AT2G35530.1	CDX80004	AT2G46270.1	18315949
AT2G35530.1	CDX95685	AT2G46270.1	18315949
AT2G35530.1	CDY42029	AT2G46270.1	18315949
AT2G35530.1	CDY07176	AT4G01120.1	18315949
AT2G35530.1	CDY48506	AT4G01120.1	18315949
AT2G35530.1	CDX69240	AT4G36730.1	18315949
AT2G35530.1	CDX75592	AT4G36730.1	18315949
AT2G35530.1	CDY24770	AT4G36730.1	18315949
AT2G35530.1	CDY35476	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40465	Canola	nucleus	43.79	22.33
AT2G35530.1	Thale cress	nucleus	47.06	17.6
CDY31695	Canola	nucleus	43.79	16.96
CDY12261	Canola	nucleus	41.83	16.8
CDY22589	Canola	nucleus	40.52	16.19
Zm00001d015118_P001	Maize	nucleus	30.07	15.86
PGSC0003DMT400047522	Potato	nucleus	39.87	15.84
GSMUA_Achr4P11610_001	Banana	nucleus	30.72	15.77
Solyc08g005290.2.1	Tomato	nucleus	39.87	15.37
KRH39598	Soybean	nucleus	41.18	15.22
KRH74331	Soybean	nucleus	41.18	15.18
Solyc08g076100.2.1	Tomato	nucleus	40.52	15.16
KRH07569	Soybean	nucleus	41.18	15.14
KXG23316	Sorghum	nucleus	37.91	15.06
KRH45342	Soybean	nucleus	40.52	14.87
VIT_02s0012g02250.t01	Wine grape	nucleus	39.87	14.77
CDX95685	Canola	nucleus	28.76	14.67
Zm00001d041142_P010	Maize	nucleus	36.6	14.66
CDX84198	Canola	nucleus	43.79	14.6
CDY65764	Canola	nucleus	37.25	14.21
TraesCS5B01G122000.2	Wheat	nucleus	35.95	14.18
TraesCS5A01G115300.2	Wheat	nucleus	35.95	14.18
TraesCS5D01G124600.1	Wheat	nucleus	35.95	14.18
CDY35476	Canola	nucleus	28.76	14.06
CDY24770	Canola	nucleus	28.76	14.06
CDX75592	Canola	nucleus	28.76	14.06
CDX69240	Canola	nucleus	28.76	14.06
Zm00001d053967_P001	Maize	nucleus	28.76	14.01
HORVU5Hr1G029130.19	Barley	nucleus	35.29	13.88
TraesCSU01G019200.1	Wheat	nucleus	30.07	13.33
TraesCS6A01G087400.2	Wheat	nucleus	30.07	13.26
GSMUA_Achr5P14150_001	Banana	nucleus	34.64	13.18
TraesCS6B01G110100.1	Wheat	nucleus	30.07	13.18
EES04440	Sorghum	nucleus	30.07	13.14
GSMUA_AchrUn_...	Banana	nucleus	32.68	13.12
HORVU6Hr1G016240.10	Barley	nucleus	30.07	13.03
GSMUA_Achr4P04530_001	Banana	nucleus	34.64	12.83
GSMUA_Achr6P01090_001	Banana	nucleus	33.33	12.35
CDY48506	Canola	nucleus	29.41	12.33
GSMUA_Achr4P18980_001	Banana	nucleus	32.03	12.16
CDY07176	Canola	nucleus	28.76	12.12
Os02t0128200-01	Rice	nucleus	27.45	12.1
Zm00001d039206_P001	Maize	nucleus	16.34	12.02
GSMUA_Achr4P27400_001	Banana	nucleus	30.72	11.44
CDY42029	Canola	nucleus	28.76	10.63
Zm00001d024041_P002	Maize	nucleus	23.53	10.47
CDX80004	Canola	golgi	28.76	9.93
CDX84103	Canola	nucleus, plastid	17.65	7.8
Os12t0233800-02	Rice	nucleus	5.88	2.89

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078H5N5	UniProt:A0A078H5N5	EnsemblPlants:CDY32123	ProteinID:CDY32123
ProteinID:CDY32123.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00051488001	InterPro:IPR004827
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0004EEADC8	InterPro:bZIP	SEG:seg	:	:

Description

BnaC04g44430DBnaC04g44430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5N5]

Coordinates

chrLK032287:+:445040..446020

Molecular Weight (calculated)

18025.4 Da

IEP (calculated)

10.853

GRAVY (calculated)

-0.949

Length

153 amino acids

Sequence
(BLAST)

001: MELTLKVGRV LLMVQVKEVM QTLKITLDLD NTTGRMHLES CLSRQRRKQS NRESARRSRL RKQAECDELA QRAEVLNEEN ASLREEINKL RSQCEELTFE
101: NTSLNSRTNF YHSLHLKALT WTRTSKNHQT SLKNTSSSNN NNNTRRFFAN RWL

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.