Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037382.1-P | Field mustard | nucleus | 98.63 | 98.09 |
| CDY07176 | Canola | nucleus | 94.79 | 95.32 |
| AT4G01120.1 | Thale cress | nucleus | 76.71 | 77.78 |
| CDX95685 | Canola | nucleus | 37.26 | 45.33 |
| KRH68860 | Soybean | nucleus | 52.05 | 44.71 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 52.6 | 44.65 |
| KRG97109 | Soybean | nucleus | 50.96 | 43.76 |
| CDY42029 | Canola | nucleus | 48.77 | 43.0 |
| PGSC0003DMT400000266 | Potato | nucleus | 48.22 | 42.21 |
| Solyc01g095460.2.1 | Tomato | nucleus | 47.95 | 41.87 |
| KRH47979 | Soybean | nucleus | 48.49 | 41.75 |
| KRH06537 | Soybean | nucleus | 47.95 | 41.27 |
| PGSC0003DMT400084203 | Potato | nucleus | 46.58 | 41.16 |
| CDX80004 | Canola | golgi | 49.86 | 41.08 |
| Solyc05g050220.2.1 | Tomato | nucleus | 44.38 | 38.94 |
| GSMUA_Achr6P32000_001 | Banana | nucleus | 36.99 | 35.81 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 41.37 | 35.45 |
| GSMUA_Achr9P05310_001 | Banana | nucleus | 39.45 | 34.62 |
| TraesCS1A01G409800.2 | Wheat | nucleus | 36.16 | 34.55 |
| CDY24770 | Canola | nucleus | 29.04 | 33.87 |
| CDY35476 | Canola | nucleus | 28.77 | 33.55 |
| Os05t0569300-01 | Rice | nucleus | 34.52 | 33.16 |
| CDX75592 | Canola | nucleus | 28.22 | 32.91 |
| CDX69240 | Canola | nucleus | 28.22 | 32.91 |
| Os01t0658900-01 | Rice | nucleus | 32.33 | 32.78 |
| Zm00001d039065_P006 | Maize | nucleus | 33.7 | 32.63 |
| TraesCS1D01G417100.1 | Wheat | nucleus | 35.89 | 32.59 |
| TraesCS1B01G439800.1 | Wheat | nucleus | 35.62 | 32.26 |
| EES18712 | Sorghum | nucleus | 32.88 | 31.41 |
| Zm00001d043992_P001 | Maize | nucleus | 32.05 | 31.03 |
| Zm00001d040500_P001 | Maize | nucleus | 16.44 | 30.93 |
| Zm00001d025638_P001 | Maize | nucleus | 16.16 | 30.89 |
| Zm00001d043908_P001 | Maize | nucleus | 16.16 | 30.89 |
| CDY32123 | Canola | nucleus | 12.33 | 29.41 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 36.44 | 29.1 |
| CDY12261 | Canola | nucleus | 26.85 | 25.72 |
| CDY31695 | Canola | nucleus | 27.67 | 25.57 |
| CDY22589 | Canola | nucleus | 26.58 | 25.33 |
| CDY40465 | Canola | nucleus | 20.0 | 24.33 |
| KXG33037 | Sorghum | nucleus | 32.6 | 23.99 |
| CDY65764 | Canola | nucleus | 26.3 | 23.94 |
| CDX84103 | Canola | nucleus, plastid | 21.92 | 23.12 |
| CDX84198 | Canola | nucleus | 27.12 | 21.57 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 20.27 | 20.0 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078IEP6 | UniProt:A0A078IEP6 | EnsemblPlants:CDY48506 | ProteinID:CDY48506 |
| ProteinID:CDY48506.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00091205001 | InterPro:IPR004827 |
| InterPro:MFMR | PFAM:PF00170 | PFAM:PF07777 | PFAM:PF16596 | ScanProsite:PS00036 | PFscan:PS50217 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF230 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0004EE7497 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g00170DBnaA09g00170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEP6]
Coordinates
chrLK032776:-:53133..55913
Molecular Weight (calculated)
39382.5 Da
IEP (calculated)
6.613
GRAVY (calculated)
-0.950
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNEEGKTT QSDKPAQVQA PPPPPEQSNV HVYHHDWAAM QAYYGPRVAI TPQYYNSNGH AAPPPPYIWG SPSPMMAPYG TPYPPFCPPG GVYAHPALQM
101: GSQPQGPASQ ATPVVATPLN LEAHPANSSG NTDQGFMTKL KEFDGLAMSI SNNKSGSGEH SSEPKNSQSS ENDDSSNGSD GNTTGGEQSR KKRSREGSPN
201: NDGKPSSQIV PLLRDESEKH AVTMGTPVMP TAMDFPQPFP GAPHEVWNEK EVKREKRKQS NRESARRSRL RKQAETEELS VKVDALVAEN MTLRSKLGQL
301: NDESEKLRLE NQALLDQLKA QATGKTENLI SGVDKNNSVS GTSSSKNAEQ QLLNVSLRTD SVAAS
101: GSQPQGPASQ ATPVVATPLN LEAHPANSSG NTDQGFMTKL KEFDGLAMSI SNNKSGSGEH SSEPKNSQSS ENDDSSNGSD GNTTGGEQSR KKRSREGSPN
201: NDGKPSSQIV PLLRDESEKH AVTMGTPVMP TAMDFPQPFP GAPHEVWNEK EVKREKRKQS NRESARRSRL RKQAETEELS VKVDALVAEN MTLRSKLGQL
301: NDESEKLRLE NQALLDQLKA QATGKTENLI SGVDKNNSVS GTSSSKNAEQ QLLNVSLRTD SVAAS
001: MGSNEEGNPT NNSDKPSQAA APEQSNVHVY HHDWAAMQAY YGPRVGIPQY YNSNLAPGHA PPPYMWASPS PMMAPYGAPY PPFCPPGGVY AHPGVQMGSQ
101: PQGPVSQSAS GVTTPLTIDA PANSAGNSDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT TGGEQSRRKR RQQRSPSTGE
201: RPSSQNSLPL RGENEKPDVT MGTPVMPTAM SFQNSAGMNG VPQPWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLSVK VDALVAENMS LRSKLGQLNN
301: ESEKLRLENE AILDQLKAQA TGKTENLISR VDKNNSVSGS KTVQHQLLNA SPITDPVAAS
101: PQGPVSQSAS GVTTPLTIDA PANSAGNSDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT TGGEQSRRKR RQQRSPSTGE
201: RPSSQNSLPL RGENEKPDVT MGTPVMPTAM SFQNSAGMNG VPQPWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLSVK VDALVAENMS LRSKLGQLNN
301: ESEKLRLENE AILDQLKAQA TGKTENLISR VDKNNSVSGS KTVQHQLLNA SPITDPVAAS
Arabidopsis Description
GBF2G-box-binding factor 2 [Source:UniProtKB/Swiss-Prot;Acc:P42775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.