Factsheet for Bra037382.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005335.1-P
Bra017316.1-P
Bra023012.1-P
Bra023243.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01120.1	Bra023243.1-P	AT1G32150.1	18315949
AT4G01120.1	Bra005335.1-P	AT2G35530.1	18315949
AT4G01120.1	Bra017316.1-P	AT2G35530.1	18315949
AT4G01120.1	Bra023012.1-P	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48506	Canola	nucleus	98.09	98.63
AT4G01120.1	Thale cress	nucleus	76.29	77.78
Bra004550.1-P	Field mustard	nucleus	49.86	48.28
KRH68860	Soybean	nucleus	52.32	45.18
VIT_15s0046g01440.t01	Wine grape	nucleus	52.86	45.12
KRG97109	Soybean	nucleus	51.5	44.47
KRH47979	Soybean	nucleus	49.05	42.45
PGSC0003DMT400000266	Potato	nucleus	48.23	42.45
Solyc01g095460.2.1	Tomato	nucleus	48.23	42.34
KRH06537	Soybean	nucleus	48.23	41.75
PGSC0003DMT400084203	Potato	nucleus	46.59	41.4
Solyc05g050220.2.1	Tomato	nucleus	44.41	39.18
GSMUA_Achr6P32000_001	Banana	nucleus	37.06	36.07
TraesCS1A01G409800.2	Wheat	nucleus	36.51	35.08
GSMUA_Achr1P05050_001	Banana	nucleus	40.6	34.98
GSMUA_Achr9P05310_001	Banana	nucleus	39.51	34.86
Bra010572.1-P	Field mustard	nucleus	29.16	34.19
Os05t0569300-01	Rice	nucleus	34.88	33.68
Bra011701.1-P	Field mustard	nucleus	28.61	33.55
Zm00001d039065_P006	Maize	nucleus	34.33	33.42
Os01t0658900-01	Rice	nucleus	32.7	33.33
TraesCS1D01G417100.1	Wheat	nucleus	36.24	33.08
TraesCS1B01G439800.1	Wheat	nucleus	35.97	32.75
EES18712	Sorghum	nucleus	33.52	32.2
Zm00001d043992_P001	Maize	nucleus	32.7	31.83
Zm00001d040500_P001	Maize	nucleus	16.62	31.44
Zm00001d025638_P001	Maize	nucleus	16.35	31.41
Zm00001d043908_P001	Maize	nucleus	16.35	31.41
HORVU1Hr1G090030.11	Barley	nucleus, plastid	36.78	29.54
Bra023243.1-P	Field mustard	nucleus	24.25	25.28
KXG33037	Sorghum	nucleus	33.24	24.6
Bra005335.1-P	Field mustard	nucleus	28.07	24.41
Bra023012.1-P	Field mustard	nucleus	26.43	24.07
HORVU1Hr1G089970.10	Barley	cytosol	20.71	20.54
Bra017316.1-P	Field mustard	nucleus	12.26	17.05

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra037382	EnsemblPlants:Bra037382.1	EnsemblPlants:Bra037382.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009637	GO:GO:0009987
GO:GO:0019748	GO:GO:0019760	GO:GO:0043565	InterPro:IPR004827	UniProt:M4F8H0	InterPro:MFMR
PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00025420F8	InterPro:bZIP	SEG:seg

Description

AT4G01120 (E=2e-108) GBF2, ATBZIP54 | GBF2 (G-BOX BINDING FACTOR 2); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA09:-:780687..782758

Molecular Weight (calculated)

39610.8 Da

IEP (calculated)

6.733

GRAVY (calculated)

-0.956

Length

367 amino acids

Sequence
(BLAST)

001: MGSNEEGKTT QSDKPAQVQA PPPPPEQSNV HVYHHDWAAM QAYYGPRVAI TPQYYNSNGH APPPPPYIWG SPSPMMAPYG TPYPPFCPPG GVYAHPALQM
101: GSQPQGPASQ ATPVVATPLN LEAHPANSSG NTDQGFMKKL KEFDGLAMSI SNNKSGSGEH SSEPKNSQSS ENDDSSNGSD GNTTGGEQSR KKRSREGSPN
201: NDGKPSSQIV PLLRDESEKQ AVTMGTPVMP TVLDFPQPFP GAPHEVWNEK EVKREKRKQS NRESARRSRL RKQAETEELS VKVDALVAEN MTLRSKLGQL
301: NDESEKLRLE NQALLDQLKA QATGKTENLI SGVDKNNSSV SGTSSSSKNA EQQLLNVSLR TDSVAAS

Best Arabidopsis Sequence Match ( AT4G01120.1 )
(BLAST)

001: MGSNEEGNPT NNSDKPSQAA APEQSNVHVY HHDWAAMQAY YGPRVGIPQY YNSNLAPGHA PPPYMWASPS PMMAPYGAPY PPFCPPGGVY AHPGVQMGSQ
101: PQGPVSQSAS GVTTPLTIDA PANSAGNSDH GFMKKLKEFD GLAMSISNNK VGSAEHSSSE HRSSQSSEND GSSNGSDGNT TGGEQSRRKR RQQRSPSTGE
201: RPSSQNSLPL RGENEKPDVT MGTPVMPTAM SFQNSAGMNG VPQPWNEKEV KREKRKQSNR ESARRSRLRK QAETEQLSVK VDALVAENMS LRSKLGQLNN
301: ESEKLRLENE AILDQLKAQA TGKTENLISR VDKNNSVSGS KTVQHQLLNA SPITDPVAAS

Arabidopsis Description

GBF2G-box-binding factor 2 [Source:UniProtKB/Swiss-Prot;Acc:P42775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.