Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G409800.2 | Wheat | nucleus | 91.81 | 96.86 |
| TraesCS1D01G417100.1 | Wheat | nucleus | 96.28 | 96.52 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 90.32 | 79.65 |
| Os05t0569300-01 | Rice | nucleus | 69.48 | 73.68 |
| EES18712 | Sorghum | nucleus | 66.5 | 70.16 |
| Zm00001d039065_P006 | Maize | nucleus | 64.76 | 69.23 |
| Zm00001d040500_P001 | Maize | nucleus | 31.27 | 64.95 |
| Zm00001d043908_P001 | Maize | nucleus | 30.27 | 63.87 |
| Zm00001d025638_P001 | Maize | nucleus | 30.27 | 63.87 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 56.82 | 61.89 |
| GSMUA_Achr6P32000_001 | Banana | nucleus | 39.21 | 41.91 |
| KRH68860 | Soybean | nucleus | 41.94 | 39.76 |
| KRG97109 | Soybean | nucleus | 41.69 | 39.53 |
| GSMUA_Achr9P05310_001 | Banana | nucleus | 40.2 | 38.94 |
| KRH06537 | Soybean | nucleus | 40.69 | 38.68 |
| KRH47979 | Soybean | nucleus | 40.2 | 38.21 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 40.69 | 38.14 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 39.95 | 37.79 |
| AT2G46270.1 | Thale cress | nucleus | 34.99 | 36.91 |
| CDY07176 | Canola | nucleus | 33.0 | 36.64 |
| Solyc01g095460.2.1 | Tomato | nucleus | 37.97 | 36.6 |
| Bra004550.1-P | Field mustard | nucleus | 34.24 | 36.41 |
| CDX95685 | Canola | nucleus | 27.05 | 36.33 |
| AT4G01120.1 | Thale cress | nucleus | 32.26 | 36.11 |
| PGSC0003DMT400000266 | Potato | nucleus | 37.22 | 35.97 |
| Bra037382.1-P | Field mustard | nucleus | 32.75 | 35.97 |
| CDY48506 | Canola | nucleus | 32.26 | 35.62 |
| PGSC0003DMT400084203 | Potato | nucleus | 35.48 | 34.62 |
| Solyc05g050220.2.1 | Tomato | nucleus | 34.99 | 33.89 |
| CDY42029 | Canola | nucleus | 34.49 | 33.57 |
| CDX80004 | Canola | golgi | 35.24 | 32.05 |
| VIT_02s0025g01020.t01 | Wine grape | nucleus | 31.27 | 31.66 |
| TraesCS5B01G122000.2 | Wheat | nucleus | 28.29 | 29.38 |
| TraesCS6B01G110100.1 | Wheat | nucleus | 25.06 | 28.94 |
| TraesCS4B01G229100.2 | Wheat | nucleus | 27.3 | 27.23 |
| TraesCS2B01G269600.2 | Wheat | nucleus | 22.58 | 24.07 |
| TraesCS5B01G470600.1 | Wheat | nucleus | 21.09 | 23.81 |
| TraesCS3B01G545800.1 | Wheat | nucleus | 8.44 | 14.72 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:MFMR | PFAM:PF00170 | PFAM:PF07777 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF345 | SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS1B01G439800 | EnsemblPlants:TraesCS1B01G439800.1 | InterPro:bZIP |
| TIGR:cd14702 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:661513720..661517051
Molecular Weight (calculated)
42732.3 Da
IEP (calculated)
9.683
GRAVY (calculated)
-0.562
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MACRYSLEFY MADRQAFSKG MAHDEAVAAQ KTGKSGSPPK DQPAPSPYPD WSAVQAYYSS GVMPPAYFAP AIAAGHPPPP YMWGPQHMMP PPFGTPYAMY
101: PHGGAYPHPL VPMMASPLSV EPAKSANSKD KSSNKKLKEI DGSAVSTGSG NSKKTSSSGD YSGEGSSDVN DLKVSGTPRK RSLDGGFDAE AIAAARNKDV
201: VASSPIIRNG AILSNQCFPA PVIKPSVTNV ANSRAIGTPV SPLPGFTGPI HTGISTELSS KDEREVKREK RKQSNRESAR RSRLRKQAET EELATQVESL
301: TAENTSLKSE IGKLTKSSEK LRIENSALVV KLKGTAAPTN TEMPLDKSAA AAAASSSPRI VENFLSMIDD TSKSGVNNHM EHSEPKLRQL LGSSATTDVV
401: AAN
101: PHGGAYPHPL VPMMASPLSV EPAKSANSKD KSSNKKLKEI DGSAVSTGSG NSKKTSSSGD YSGEGSSDVN DLKVSGTPRK RSLDGGFDAE AIAAARNKDV
201: VASSPIIRNG AILSNQCFPA PVIKPSVTNV ANSRAIGTPV SPLPGFTGPI HTGISTELSS KDEREVKREK RKQSNRESAR RSRLRKQAET EELATQVESL
301: TAENTSLKSE IGKLTKSSEK LRIENSALVV KLKGTAAPTN TEMPLDKSAA AAAASSSPRI VENFLSMIDD TSKSGVNNHM EHSEPKLRQL LGSSATTDVV
401: AAN
001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
Arabidopsis Description
GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.