CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07569
KRH39598
KRH45342
KRH74331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	KRH07569	AT1G32150.1	18315949
AT2G46270.1	KRH39598	AT1G32150.1	18315949
AT2G46270.1	KRH45342	AT1G32150.1	18315949
AT2G46270.1	KRH74331	AT1G32150.1	18315949
AT2G46270.1	KRH07569	AT2G35530.1	18315949
AT2G46270.1	KRH39598	AT2G35530.1	18315949
AT2G46270.1	KRH45342	AT2G35530.1	18315949
AT2G46270.1	KRH74331	AT2G35530.1	18315949
AT4G01120.1	KRH07569	AT1G32150.1	18315949
AT4G01120.1	KRH39598	AT1G32150.1	18315949
AT4G01120.1	KRH45342	AT1G32150.1	18315949
AT4G01120.1	KRH74331	AT1G32150.1	18315949
AT4G01120.1	KRH07569	AT2G35530.1	18315949
AT4G01120.1	KRH39598	AT2G35530.1	18315949
AT4G01120.1	KRH45342	AT2G35530.1	18315949
AT4G01120.1	KRH74331	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68860	Soybean	nucleus	95.76	95.76
KRH06537	Soybean	nucleus	78.35	78.54
KRH47979	Soybean	nucleus	77.41	77.59
VIT_15s0046g01440.t01	Wine grape	nucleus	70.35	69.53
Solyc01g095460.2.1	Tomato	nucleus	58.59	59.57
PGSC0003DMT400000266	Potato	nucleus	57.41	58.51
AT2G46270.1	Thale cress	nucleus	52.0	57.85
Bra004550.1-P	Field mustard	nucleus	50.59	56.73
PGSC0003DMT400084203	Potato	nucleus	53.18	54.72
Solyc05g050220.2.1	Tomato	nucleus	52.24	53.37
CDX95685	Canola	nucleus	36.71	52.0
CDY07176	Canola	nucleus	44.24	51.79
CDY42029	Canola	nucleus	50.35	51.69
Bra037382.1-P	Field mustard	nucleus	44.47	51.5
CDY48506	Canola	nucleus	43.76	50.96
AT4G01120.1	Thale cress	nucleus	42.59	50.28
GSMUA_Achr6P32000_001	Banana	nucleus	43.53	49.07
CDX80004	Canola	golgi	50.35	48.31
TraesCS1A01G409800.2	Wheat	nucleus	40.24	44.76
Zm00001d039065_P006	Maize	nucleus	38.59	43.5
Os05t0569300-01	Rice	nucleus	38.82	43.42
GSMUA_Achr1P05050_001	Banana	nucleus	43.29	43.19
EES18712	Sorghum	nucleus	38.59	42.93
GSMUA_Achr9P05310_001	Banana	nucleus	41.41	42.31
TraesCS1D01G417100.1	Wheat	nucleus	40.0	42.29
TraesCS1B01G439800.1	Wheat	nucleus	39.53	41.69
Zm00001d040500_P001	Maize	nucleus	18.12	39.69
Zm00001d043992_P001	Maize	nucleus	35.06	39.52
Os01t0658900-01	Rice	nucleus	33.41	39.44
Zm00001d025638_P001	Maize	nucleus	17.65	39.27
Zm00001d043908_P001	Maize	nucleus	17.65	39.27
KRH69948	Soybean	nucleus	29.88	37.57
HORVU1Hr1G090030.11	Barley	nucleus, plastid	40.0	37.2
KRH08310	Soybean	nucleus	29.18	36.69
KRH76850	Soybean	nucleus	28.24	34.38
KRH28623	Soybean	nucleus	28.94	33.33
KRH39598	Soybean	nucleus	29.41	30.19
KRH07569	Soybean	nucleus	29.41	30.05
KRH45342	Soybean	nucleus	29.18	29.74
KXG33037	Sorghum	nucleus	34.35	29.44
KRH74331	Soybean	nucleus	28.71	29.4
HORVU1Hr1G089970.10	Barley	cytosol	24.71	28.38
KRG89193	Soybean	nucleus	19.53	27.85

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100781875	MapMan:15.5.4.1	EMBL:ACUP02012177	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G252600
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:K7N091	EnsemblPlants:KRG97109	ProteinID:KRG97109
ProteinID:KRG97109.1	ProteinID:KRG97110.1	ProteinID:KRG97111.1	ProteinID:KRG97112.1	ProteinID:KRG97113.1	ProteinID:KRG97114.1
EMBL:KT031145	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000233ED42
InterPro:bZIP	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:49805741..49812150

Molecular Weight (calculated)

45702.1 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.858

Length

425 amino acids

Sequence
(BLAST)

001: MGNSEEEKST KTEKPSSPVT VDQANQTNQT NIHVYPDWAA MQAYYGPRVT MPPYYNSAVA SGHAPHPYMW GPPQPMMPPY GPPYAAIYPH GGVYTHPAVP
101: IGPHTHSQGV PSSPAAGTPL SIETPPKSSG NTDQGLMKKL KEFDGLAMSI GNGHAESAEP GGENRLSESV DTEGSSDGSD GNTSGANQTR RKRSREGTPT
201: TDGEGKTEMQ GSPISKETAA SNKMLAVVTA GVAGTIVGPV VSSGMTTTLE LRNPSSVHSK ASAPQPCPVL PAETWLQNER ELKRERRKQS NRESARRSRL
301: RKQAETEELA RKVESLNAEN ATLKSEINRL TESSEKMRVE NATLRGKLKN AQLRQTQEIT LNIIDSQRAT PISTENLLSR VNNNSGSNDR TVEDENGFCE
401: NKPNSGAKLH QLLDTSPRAD AVAAG

Best Arabidopsis Sequence Match ( AT2G46270.1 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.