Factsheet for Solyc05g050220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g005290.2.1
Solyc08g076100.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	Solyc08g005290.2.1	AT1G32150.1	18315949
AT2G46270.1	Solyc08g076100.2.1	AT1G32150.1	18315949
AT2G46270.1	Solyc08g005290.2.1	AT2G35530.1	18315949
AT2G46270.1	Solyc08g076100.2.1	AT2G35530.1	18315949
AT4G01120.1	Solyc08g005290.2.1	AT1G32150.1	18315949
AT4G01120.1	Solyc08g076100.2.1	AT1G32150.1	18315949
AT4G01120.1	Solyc08g005290.2.1	AT2G35530.1	18315949
AT4G01120.1	Solyc08g076100.2.1	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084203	Potato	nucleus	88.7	89.35
Solyc01g095460.2.1	Tomato	nucleus	65.38	65.07
VIT_15s0046g01440.t01	Wine grape	nucleus	55.53	53.72
KRH68860	Soybean	nucleus	53.61	52.47
KRG97109	Soybean	nucleus	53.37	52.24
KRH47979	Soybean	nucleus	50.24	49.29
KRH06537	Soybean	nucleus	49.04	48.11
AT2G46270.1	Thale cress	nucleus	43.27	47.12
Bra004550.1-P	Field mustard	nucleus	42.55	46.7
Bra037382.1-P	Field mustard	nucleus	39.18	44.41
CDY48506	Canola	nucleus	38.94	44.38
CDY07176	Canola	nucleus	38.7	44.35
CDX95685	Canola	nucleus	31.97	44.33
AT4G01120.1	Thale cress	nucleus	37.26	43.06
CDY42029	Canola	nucleus	42.55	42.75
GSMUA_Achr6P32000_001	Banana	nucleus	37.74	41.64
CDX80004	Canola	golgi	42.79	40.18
TraesCS1A01G409800.2	Wheat	nucleus	34.13	37.17
GSMUA_Achr9P05310_001	Banana	nucleus	36.78	36.78
Os05t0569300-01	Rice	nucleus	33.41	36.58
Zm00001d039065_P006	Maize	nucleus	32.69	36.07
GSMUA_Achr1P05050_001	Banana	nucleus	36.78	35.92
EES18712	Sorghum	nucleus	32.69	35.6
TraesCS1D01G417100.1	Wheat	nucleus	34.13	35.32
TraesCS1B01G439800.1	Wheat	nucleus	33.89	34.99
Solyc02g062950.2.1	Tomato	nucleus	28.37	34.6
Zm00001d040500_P001	Maize	nucleus	16.11	34.54
Zm00001d025638_P001	Maize	nucleus	15.62	34.03
Zm00001d043908_P001	Maize	nucleus	15.62	34.03
Os01t0658900-01	Rice	nucleus	28.85	33.33
Zm00001d043992_P001	Maize	nucleus	29.57	32.63
HORVU1Hr1G090030.11	Barley	nucleus, plastid	34.13	31.07
Solyc02g085610.2.1	Tomato	nucleus	20.91	30.63
Solyc08g005290.2.1	Tomato	nucleus	27.4	28.72
Solyc08g076100.2.1	Tomato	nucleus	25.96	26.41
KXG33037	Sorghum	nucleus	28.85	24.19
HORVU1Hr1G089970.10	Barley	cytosol	18.99	21.35

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4C154	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc05g050220.2
EnsemblPlants:Solyc05g050220.2.1	UniParc:UPI0002767057	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:60269315..60274218

Molecular Weight (calculated)

44926.3 Da

IEP (calculated)

9.195

GRAVY (calculated)

-0.750

Length

416 amino acids

Sequence
(BLAST)

001: MGNIEDRKSS TPEKSFSTAP DQSSFHVYPD WAVMQAYYAH RVAVPPYVSS AVAPGHAPHP YMWGPLPPMF PPYGTPYAGV YAHGGVYPHS GVPIVFRPQA
101: HGMTSSPVVS QTKNTASLGM DTSAKSSGNS DQGLTSQSKG FDGLGISIGN HSVDNGAGTD HGPSQSGQTE GSSDGSNIHT TEMREHSKKR SRESTPNNSG
201: EGKSQRMCSP QRTREVNGAS ENGIGIAVNP GIIAEKLAGT TFSPIMTTTP LVKSSPTSQI CPAMPGEVWL QNERELKREK RKQSNRESAR RSRLRKQAEA
301: EELAVQVQSL TSENLALRSE INKFTENSEK LKFENVGLME RLKNKQGQAK EVTLGMIDDK RLKPVSTADL LARVNNNNGS FSRTNEDGEV HDSTSGAKLH
401: QLLDASSRTD HAVAAR

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.