Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G029130.19 | |
| HORVU6Hr1G016240.10 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G409800.2 | Wheat | nucleus | 63.24 | 61.26 |
| TraesCS1D01G417100.1 | Wheat | nucleus | 62.7 | 57.71 |
| TraesCS1B01G439800.1 | Wheat | nucleus | 61.89 | 56.82 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 65.95 | 53.39 |
| Os05t0569300-01 | Rice | nucleus | 48.92 | 47.63 |
| EES18712 | Sorghum | nucleus | 48.38 | 46.86 |
| Zm00001d039065_P006 | Maize | nucleus | 47.3 | 46.42 |
| Zm00001d040500_P001 | Maize | nucleus | 15.95 | 30.41 |
| Zm00001d025638_P001 | Maize | nucleus | 15.14 | 29.32 |
| Zm00001d043908_P001 | Maize | nucleus | 15.14 | 29.32 |
| GSMUA_Achr6P32000_001 | Banana | nucleus | 25.68 | 25.2 |
| KRH68860 | Soybean | nucleus | 28.65 | 24.94 |
| KRG97109 | Soybean | nucleus | 28.38 | 24.71 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 28.38 | 24.42 |
| KRH47979 | Soybean | nucleus | 26.76 | 23.35 |
| KRH06537 | Soybean | nucleus | 26.76 | 23.35 |
| Bra004550.1-P | Field mustard | nucleus | 23.78 | 23.22 |
| AT2G46270.1 | Thale cress | nucleus | 23.78 | 23.04 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 26.22 | 22.77 |
| Solyc01g095460.2.1 | Tomato | nucleus | 25.68 | 22.73 |
| GSMUA_Achr9P05310_001 | Banana | nucleus | 25.41 | 22.6 |
| PGSC0003DMT400000266 | Potato | nucleus | 25.14 | 22.3 |
| CDY42029 | Canola | nucleus | 23.51 | 21.01 |
| CDY07176 | Canola | nucleus | 20.54 | 20.94 |
| AT4G01120.1 | Thale cress | nucleus | 20.27 | 20.83 |
| Bra037382.1-P | Field mustard | nucleus | 20.54 | 20.71 |
| PGSC0003DMT400084203 | Potato | nucleus | 22.97 | 20.58 |
| CDY48506 | Canola | nucleus | 20.0 | 20.27 |
| CDX95685 | Canola | nucleus | 16.22 | 20.0 |
| CDX80004 | Canola | golgi | 23.78 | 19.86 |
| VIT_02s0025g01020.t01 | Wine grape | nucleus | 20.54 | 19.1 |
| Solyc05g050220.2.1 | Tomato | nucleus | 21.35 | 18.99 |
| HORVU6Hr1G016240.10 | Barley | nucleus | 15.68 | 16.43 |
| HORVU4Hr1G064120.18 | Barley | nucleus | 17.84 | 16.34 |
| HORVU5Hr1G029130.19 | Barley | nucleus | 14.05 | 13.37 |
| HORVU2Hr1G055160.2 | Barley | extracellular, mitochondrion, plastid, vacuole | 11.08 | 12.5 |
| HORVU0Hr1G013950.21 | Barley | nucleus | 11.35 | 11.97 |
| HORVU2Hr1G055230.2 | Barley | nucleus | 1.89 | 5.07 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G089970.10 | EnsemblPlantsGene:HORVU1Hr1G089970 | InterPro:MFMR | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF345 | PFAM:PF07777 |
| SEG:seg | UniParc:UPI000B46485C | UniProt:A0A287GND9 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr1H:+:545055363..545060494
Molecular Weight (calculated)
35079.7 Da
IEP (calculated)
10.187
GRAVY (calculated)
-0.461
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQRTPLDQP APCPYPDWSA MQAYYGSGVM PPAYFAPAIA AGHPPPPYMW GPQHMMPPPF GTPYAMYSHG GAYPHPLVPM MANPLSVEPA KSANSKDKSS
101: NKKLKEIDGS AVSTGSGNSK KTTSSGDYSG EGSSDVNDLK VSGTPRKRSL DGGFDTEATA AARNKDVVAS NPTIRNGTIL PNQCFPAPVI KPSVTNVANS
201: RAIGTPVSPL PGVMAPIHTG ISTELSSKPF QVTGERSKKL LHLHEKKEPI KYINLGRING SQSPWPAPSP SPPRPTSPSP SASSSPSPSA XLLPSPSPSP
301: XPSRPVPFPL PPSXPRPRPV PSPTSSRXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLFFCSILLT
101: NKKLKEIDGS AVSTGSGNSK KTTSSGDYSG EGSSDVNDLK VSGTPRKRSL DGGFDTEATA AARNKDVVAS NPTIRNGTIL PNQCFPAPVI KPSVTNVANS
201: RAIGTPVSPL PGVMAPIHTG ISTELSSKPF QVTGERSKKL LHLHEKKEPI KYINLGRING SQSPWPAPSP SPPRPTSPSP SASSSPSPSA XLLPSPSPSP
301: XPSRPVPFPL PPSXPRPRPV PSPTSSRXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLFFCSILLT
001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
Arabidopsis Description
GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.