Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G409800.2 | Wheat | nucleus | 93.53 | 98.43 |
| TraesCS1B01G439800.1 | Wheat | nucleus | 96.52 | 96.28 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 90.55 | 79.65 |
| Os05t0569300-01 | Rice | nucleus | 69.65 | 73.68 |
| EES18712 | Sorghum | nucleus | 67.41 | 70.94 |
| Zm00001d039065_P006 | Maize | nucleus | 65.17 | 69.5 |
| Zm00001d040500_P001 | Maize | nucleus | 31.59 | 65.46 |
| Zm00001d043908_P001 | Maize | nucleus | 30.6 | 64.4 |
| Zm00001d025638_P001 | Maize | nucleus | 30.6 | 64.4 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 57.71 | 62.7 |
| GSMUA_Achr6P32000_001 | Banana | nucleus | 39.55 | 42.18 |
| KRH68860 | Soybean | nucleus | 42.54 | 40.24 |
| KRG97109 | Soybean | nucleus | 42.29 | 40.0 |
| GSMUA_Achr9P05310_001 | Banana | nucleus | 40.8 | 39.42 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 41.79 | 39.07 |
| KRH06537 | Soybean | nucleus | 40.8 | 38.68 |
| KRH47979 | Soybean | nucleus | 40.55 | 38.44 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 40.55 | 38.26 |
| AT2G46270.1 | Thale cress | nucleus | 35.57 | 37.43 |
| CDX95685 | Canola | nucleus | 27.61 | 37.0 |
| Bra004550.1-P | Field mustard | nucleus | 34.83 | 36.94 |
| Solyc01g095460.2.1 | Tomato | nucleus | 38.31 | 36.84 |
| CDY07176 | Canola | nucleus | 33.08 | 36.64 |
| AT4G01120.1 | Thale cress | nucleus | 32.59 | 36.39 |
| Bra037382.1-P | Field mustard | nucleus | 33.08 | 36.24 |
| PGSC0003DMT400000266 | Potato | nucleus | 37.56 | 36.21 |
| CDY48506 | Canola | nucleus | 32.59 | 35.89 |
| PGSC0003DMT400084203 | Potato | nucleus | 35.82 | 34.87 |
| Solyc05g050220.2.1 | Tomato | nucleus | 35.32 | 34.13 |
| CDY42029 | Canola | nucleus | 34.83 | 33.82 |
| CDX80004 | Canola | golgi | 35.82 | 32.51 |
| VIT_02s0025g01020.t01 | Wine grape | nucleus | 31.84 | 32.16 |
| TraesCS5D01G124600.1 | Wheat | nucleus | 28.11 | 29.12 |
| TraesCS4D01G230200.3 | Wheat | nucleus | 27.61 | 27.48 |
| TraesCS5D01G473000.1 | Wheat | nucleus | 22.14 | 24.59 |
| TraesCS2D01G236200.3 | Wheat | nucleus | 22.39 | 23.75 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:MFMR | PFAM:PF00170 | PFAM:PF07777 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF345 | SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS1D01G417100 | EnsemblPlants:TraesCS1D01G417100.1 | InterPro:bZIP |
| TIGR:cd14702 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:475516777..475520408
Molecular Weight (calculated)
42750.5 Da
IEP (calculated)
9.769
GRAVY (calculated)
-0.574
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MACRYSLEFY MADRQAFSKG MAHDEAVAAQ KTGKSGSPPK DQPAPSPYPD WSAMQAYYSS GVMPPAYFAP AMAAGHPPPP YMWGPQHMMP PPFGTPYAMY
101: PHGGAYPHPL VPMMASPLSV EPAKSANSKD KSSNKKLKEI DGSAVSTGSG NSKKTSSSGD YSGEGSSDVN DLKVSGTPRK RSLDGGFDTE ATVAARNKDV
201: VASSPIIRNG AILSNQCFPA PVIKPSVTNV ANSRAIGTPV SPLPGVMGPI HTGISTELSS KDEREVKREK RKQSNRESAR RSRLRKQAET EELATQVESL
301: TAENTSLKSE IGKLTKSSEK LRIENSALVV KLKGTAAPTS AEMPLDKTAV AAPSSSPRVV ENFLSMIDDT SKSGVKNHME HSEPKLRQLL GSSATTDVVA
401: AN
101: PHGGAYPHPL VPMMASPLSV EPAKSANSKD KSSNKKLKEI DGSAVSTGSG NSKKTSSSGD YSGEGSSDVN DLKVSGTPRK RSLDGGFDTE ATVAARNKDV
201: VASSPIIRNG AILSNQCFPA PVIKPSVTNV ANSRAIGTPV SPLPGVMGPI HTGISTELSS KDEREVKREK RKQSNRESAR RSRLRKQAET EELATQVESL
301: TAENTSLKSE IGKLTKSSEK LRIENSALVV KLKGTAAPTS AEMPLDKTAV AAPSSSPRVV ENFLSMIDDT SKSGVKNHME HSEPKLRQLL GSSATTDVVA
401: AN
001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
Arabidopsis Description
GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.