Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400047522 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g095460.2.1 | Tomato | nucleus | 95.44 | 95.22 |
| PGSC0003DMT400084203 | Potato | nucleus | 67.87 | 68.52 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 62.11 | 60.23 |
| KRH68860 | Soybean | nucleus | 58.75 | 57.65 |
| KRG97109 | Soybean | nucleus | 58.51 | 57.41 |
| KRH47979 | Soybean | nucleus | 55.64 | 54.72 |
| KRH06537 | Soybean | nucleus | 54.68 | 53.77 |
| AT2G46270.1 | Thale cress | nucleus | 49.16 | 53.66 |
| Bra004550.1-P | Field mustard | nucleus | 47.72 | 52.51 |
| CDX95685 | Canola | nucleus | 35.01 | 48.67 |
| CDY07176 | Canola | nucleus | 42.21 | 48.48 |
| Bra037382.1-P | Field mustard | nucleus | 42.45 | 48.23 |
| CDY48506 | Canola | nucleus | 42.21 | 48.22 |
| AT4G01120.1 | Thale cress | nucleus | 41.01 | 47.5 |
| CDY42029 | Canola | nucleus | 46.52 | 46.86 |
| CDX80004 | Canola | golgi | 47.72 | 44.92 |
| GSMUA_Achr6P32000_001 | Banana | nucleus | 40.05 | 44.3 |
| GSMUA_Achr9P05310_001 | Banana | nucleus | 41.01 | 41.11 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 41.73 | 40.85 |
| TraesCS1A01G409800.2 | Wheat | nucleus | 36.45 | 39.79 |
| Os05t0569300-01 | Rice | nucleus | 35.97 | 39.47 |
| Zm00001d039065_P006 | Maize | nucleus | 34.77 | 38.46 |
| EES18712 | Sorghum | nucleus | 34.53 | 37.7 |
| TraesCS1D01G417100.1 | Wheat | nucleus | 36.21 | 37.56 |
| TraesCS1B01G439800.1 | Wheat | nucleus | 35.97 | 37.22 |
| Zm00001d043992_P001 | Maize | nucleus | 33.33 | 36.87 |
| Os01t0658900-01 | Rice | nucleus | 30.94 | 35.83 |
| Zm00001d040500_P001 | Maize | nucleus | 16.07 | 34.54 |
| Zm00001d025638_P001 | Maize | nucleus | 15.35 | 33.51 |
| Zm00001d043908_P001 | Maize | nucleus | 15.35 | 33.51 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 36.69 | 33.48 |
| PGSC0003DMT400032960 | Potato | nucleus | 28.54 | 29.75 |
| KXG33037 | Sorghum | nucleus | 33.09 | 27.82 |
| PGSC0003DMT400047522 | Potato | nucleus | 25.66 | 27.79 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 22.3 | 25.14 |
Protein Annotations
| Gene3D:1.20.5.170 | EntrezGene:102597029 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | UniProt:M0ZGE8 | InterPro:MFMR | PFAM:PF00170 | PFAM:PF07777 | PFAM:PF16596 |
| EnsemblPlantsGene:PGSC0003DMG400000088 | PGSC:PGSC0003DMG400000088 | EnsemblPlants:PGSC0003DMT400000266 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF230 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI00029610BA | RefSeq:XP_006339668.1 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
TAF-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400000088]
Coordinates
chr1:+:73044558..73051123
Molecular Weight (calculated)
44494.7 Da
IEP (calculated)
5.985
GRAVY (calculated)
-0.749
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNSEDGKSC KLEKPSSPAP DQSNLHVYPD WAAMQAYYGP RVAVPAYFNS AVAPGHTPHP YMWGPQPMVP PYGAPYAAIY AHGGVYAHPG VPIGSHPPGH
101: VIATSPVVSQ AMDGASLSLD ASAKSLGNSD RGLMTKLKEF EGLAMSLGNG STDNVEGGTD NGHSQSGETE GSTDGSDTNG AGVSERSKKR SCETTPDNSG
201: DDKSHSRRCQ PSGEVNDDGE KSIVIAAKMT GTVLSPCMTT LEMRNPASAH MKSSPTNGSP LSPALPNETW LQNERELKRE KRKQSNRESA RRSRLRKQAE
301: AEELSIRVQA LTGENLTLRS EINKLMENSE KLKLDNAALM ERLKNEELGQ TEEVSLGKIA DKRLQPVGTV NLLARVNNSG SSDTTNEEGE VYENNSSGAK
401: LHQLLDTSPR SDAVAAG
101: VIATSPVVSQ AMDGASLSLD ASAKSLGNSD RGLMTKLKEF EGLAMSLGNG STDNVEGGTD NGHSQSGETE GSTDGSDTNG AGVSERSKKR SCETTPDNSG
201: DDKSHSRRCQ PSGEVNDDGE KSIVIAAKMT GTVLSPCMTT LEMRNPASAH MKSSPTNGSP LSPALPNETW LQNERELKRE KRKQSNRESA RRSRLRKQAE
301: AEELSIRVQA LTGENLTLRS EINKLMENSE KLKLDNAALM ERLKNEELGQ TEEVSLGKIA DKRLQPVGTV NLLARVNNSG SSDTTNEEGE VYENNSSGAK
401: LHQLLDTSPR SDAVAAG
001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
Arabidopsis Description
GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.