Factsheet for Zm00001d039065_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015118_P001
Zm00001d024041_P002
Zm00001d039206_P001
Zm00001d041142_P010
Zm00001d053967_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	Zm00001d015118_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d024041_P002	AT1G32150.1	18315949
AT2G46270.1	Zm00001d039206_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d041142_P010	AT1G32150.1	18315949
AT2G46270.1	Zm00001d053967_P001	AT1G32150.1	18315949
AT2G46270.1	Zm00001d015118_P001	AT2G35530.1	18315949
AT2G46270.1	Zm00001d024041_P002	AT2G35530.1	18315949
AT2G46270.1	Zm00001d039206_P001	AT2G35530.1	18315949
AT2G46270.1	Zm00001d041142_P010	AT2G35530.1	18315949
AT2G46270.1	Zm00001d053967_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d015118_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d024041_P002	AT1G32150.1	18315949
AT4G01120.1	Zm00001d039206_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d041142_P010	AT1G32150.1	18315949
AT4G01120.1	Zm00001d053967_P001	AT1G32150.1	18315949
AT4G01120.1	Zm00001d015118_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d024041_P002	AT2G35530.1	18315949
AT4G01120.1	Zm00001d039206_P001	AT2G35530.1	18315949
AT4G01120.1	Zm00001d041142_P010	AT2G35530.1	18315949
AT4G01120.1	Zm00001d053967_P001	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040500_P001	Maize	nucleus	48.01	93.3
Zm00001d043908_P001	Maize	nucleus	46.15	91.1
Zm00001d025638_P001	Maize	nucleus	46.15	91.1
EES18712	Sorghum	nucleus	89.12	87.96
Os05t0569300-01	Rice	nucleus	72.94	72.37
TraesCS1A01G409800.2	Wheat	nucleus	70.03	69.11
TraesCS1D01G417100.1	Wheat	nucleus	69.5	65.17
TraesCS1B01G439800.1	Wheat	nucleus	69.23	64.76
HORVU1Hr1G090030.11	Barley	nucleus, plastid	70.56	58.21
Zm00001d043992_P001	Maize	nucleus	50.13	50.13
HORVU1Hr1G089970.10	Barley	cytosol	46.42	47.3
GSMUA_Achr6P32000_001	Banana	nucleus	41.38	41.38
GSMUA_Achr9P05310_001	Banana	nucleus	43.24	39.18
KRG97109	Soybean	nucleus	43.5	38.59
KRH68860	Soybean	nucleus	43.5	38.59
KRH06537	Soybean	nucleus	42.71	37.97
KRH47979	Soybean	nucleus	41.91	37.26
Bra004550.1-P	Field mustard	nucleus	37.4	37.2
CDX95685	Canola	nucleus	29.44	37.0
VIT_15s0046g01440.t01	Wine grape	nucleus	42.18	36.98
GSMUA_Achr1P05050_001	Banana	nucleus	41.38	36.62
AT2G46270.1	Thale cress	nucleus	36.6	36.13
Solyc01g095460.2.1	Tomato	nucleus	38.99	35.17
PGSC0003DMT400000266	Potato	nucleus	38.46	34.77
AT4G01120.1	Thale cress	nucleus	33.16	34.72
CDY07176	Canola	nucleus	33.42	34.71
Bra037382.1-P	Field mustard	nucleus	33.42	34.33
CDY42029	Canola	nucleus	37.14	33.82
CDY48506	Canola	nucleus	32.63	33.7
PGSC0003DMT400084203	Potato	nucleus	36.87	33.66
Solyc05g050220.2.1	Tomato	nucleus	36.07	32.69
CDX80004	Canola	golgi	37.4	31.83
VIT_02s0025g01020.t01	Wine grape	nucleus	30.77	29.15
Zm00001d053967_P001	Maize	nucleus	23.87	28.66
Zm00001d024285_P001	Maize	nucleus	16.18	28.64
Zm00001d015118_P001	Maize	nucleus	21.49	27.93
Zm00001d041142_P010	Maize	nucleus	27.85	27.49
Zm00001d039206_P001	Maize	nucleus	15.12	27.4
Zm00001d034571_P001	Maize	nucleus	23.34	24.72
Zm00001d047967_P003	Maize	nucleus	26.53	23.64
Zm00001d005244_P002	Maize	nucleus	23.61	23.42
Zm00001d019166_P002	Maize	nucleus	22.55	21.91
Zm00001d024041_P002	Maize	nucleus	18.04	19.77
Zm00001d028372_P005	Maize	nucleus	30.24	18.81

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:542309	ProteinID:AQK88643.1	ProteinID:AQK88644.1	ProteinID:AQK88645.1
ProteinID:AQK88646.1	ProteinID:AQK88649.1	ProteinID:AQK88650.1	UniProt:B4F937	EMBL:BT033625	EMBL:BT062784
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI00017B622F	EnsemblPlantsGene:Zm00001d039065
EnsemblPlants:Zm00001d039065_P006	EnsemblPlants:Zm00001d039065_T006	InterPro:bZIP	SEG:seg	:	:

Description

G-box binding factor G-box binding factor

Coordinates

chr6:+:169491192..169496107

Molecular Weight (calculated)

40124.8 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.678

Length

377 amino acids

Sequence
(BLAST)

001: MAQDEAVATQ KTGNTTSPSK DYPTPSPYPD WSTMQAYYGP GVLPPTYFTP AIAPGHPPPY MWGPQPIMPP PFGTPYAAVY PHGGAYPHPL VPMMSTPMSV
101: EPAKSTNSKE KNSNKKLKEI DRTAVSAGSG NSKRTVSSIE DYSAEGSSDV NDQNVNETSR KRSSDGGPGA ETTTGGNTEC VLAPNHTLGN ATILPQHCFS
201: APVIKPSATN VANSRAIGTA LSPPPGVMVP VHNAVPSDLS VKDERELKRE KRKQSNRESA RRSRLRKQAE TEELATQVES LAAENTSLRS EIGQLTESSE
301: KLRLENSALM VKLKDTAEPS PIKASASPSS PRASAENFLS MIDSANAPSV SRHTEHGGPR LRQLLDSSPA TDVAAVS

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.