Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G417100.1 | Wheat | nucleus | 98.43 | 93.53 |
| TraesCS1B01G439800.1 | Wheat | nucleus | 96.86 | 91.81 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 93.98 | 78.56 |
| Os05t0569300-01 | Rice | nucleus | 74.08 | 74.47 |
| EES18712 | Sorghum | nucleus | 71.47 | 71.47 |
| Zm00001d039065_P006 | Maize | nucleus | 69.11 | 70.03 |
| Zm00001d040500_P001 | Maize | nucleus | 32.98 | 64.95 |
| Zm00001d043908_P001 | Maize | nucleus | 31.94 | 63.87 |
| Zm00001d025638_P001 | Maize | nucleus | 31.94 | 63.87 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 61.26 | 63.24 |
| GSMUA_Achr6P32000_001 | Banana | nucleus | 41.88 | 42.44 |
| KRH68860 | Soybean | nucleus | 45.03 | 40.47 |
| KRG97109 | Soybean | nucleus | 44.76 | 40.24 |
| GSMUA_Achr9P05310_001 | Banana | nucleus | 43.19 | 39.66 |
| KRH06537 | Soybean | nucleus | 43.46 | 39.15 |
| VIT_15s0046g01440.t01 | Wine grape | nucleus | 43.98 | 39.07 |
| KRH47979 | Soybean | nucleus | 42.93 | 38.68 |
| GSMUA_Achr1P05050_001 | Banana | nucleus | 42.93 | 38.5 |
| AT2G46270.1 | Thale cress | nucleus | 37.7 | 37.7 |
| Bra004550.1-P | Field mustard | nucleus | 36.91 | 37.2 |
| Solyc01g095460.2.1 | Tomato | nucleus | 40.58 | 37.08 |
| CDX95685 | Canola | nucleus | 29.06 | 37.0 |
| CDY07176 | Canola | nucleus | 35.08 | 36.91 |
| AT4G01120.1 | Thale cress | nucleus | 34.55 | 36.67 |
| Bra037382.1-P | Field mustard | nucleus | 35.08 | 36.51 |
| PGSC0003DMT400000266 | Potato | nucleus | 39.79 | 36.45 |
| CDY48506 | Canola | nucleus | 34.55 | 36.16 |
| PGSC0003DMT400084203 | Potato | nucleus | 37.96 | 35.11 |
| Solyc05g050220.2.1 | Tomato | nucleus | 37.17 | 34.13 |
| CDY42029 | Canola | nucleus | 36.65 | 33.82 |
| VIT_02s0025g01020.t01 | Wine grape | nucleus | 33.77 | 32.41 |
| CDX80004 | Canola | golgi | 36.91 | 31.83 |
| TraesCS5A01G115300.2 | Wheat | nucleus | 29.84 | 29.38 |
| TraesCS6A01G087400.2 | Wheat | nucleus | 26.18 | 28.82 |
| TraesCS4A01G073000.4 | Wheat | nucleus | 29.06 | 27.48 |
| TraesCS5A01G460800.2 | Wheat | nucleus | 22.77 | 24.44 |
| TraesCS2A01G245700.2 | Wheat | nucleus | 23.3 | 23.55 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:MFMR | PFAM:PF00170 | PFAM:PF07777 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF345 | SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS1A01G409800 | EnsemblPlants:TraesCS1A01G409800.2 | InterPro:bZIP |
| TIGR:cd14702 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:571287763..571291291
Molecular Weight (calculated)
40305.6 Da
IEP (calculated)
9.832
GRAVY (calculated)
-0.584
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHDEAVAAQ KTGKSGSPPK DQPAPSPYPD WSAMQAYYGS GVMPPAYFAP AIAAGHPPPP YMWGPQHMMP PPFGTPYAMY PHGGAYPHPL VPMMASPLSV
101: EPAKSANSKD KSSNKKLKEI DGSAVSTGSG NSKKTSSSGD YSGEGSSDVN DLKVSGTPRK RSLDGGFDAE ATAAARNKDV VASSPIIRNG AILSNQCFPA
201: PVIKPSVTNV ANSRAIGTPV SPLPGVMGPI HTGISTELSS KDEREVKREK RKQSNRESAR RSRLRKQAET EELATQVESL TAENTSLKSE IGKLTKSSEK
301: LRIENSALVM KLKGTAAPTS AEMPLDKSAV AAPSSSPRVV ENFLSMIDDT SKSGVKNHME HSEPKLRQLL GSSATTDVVA AN
101: EPAKSANSKD KSSNKKLKEI DGSAVSTGSG NSKKTSSSGD YSGEGSSDVN DLKVSGTPRK RSLDGGFDAE ATAAARNKDV VASSPIIRNG AILSNQCFPA
201: PVIKPSVTNV ANSRAIGTPV SPLPGVMGPI HTGISTELSS KDEREVKREK RKQSNRESAR RSRLRKQAET EELATQVESL TAENTSLKSE IGKLTKSSEK
301: LRIENSALVM KLKGTAAPTS AEMPLDKSAV AAPSSSPRVV ENFLSMIDDT SKSGVKNHME HSEPKLRQLL GSSATTDVVA AN
001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG
Arabidopsis Description
GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.