Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5B01G470600.1 | Wheat | nucleus | 97.47 | 97.2 |
TraesCS5D01G473000.1 | Wheat | nucleus | 96.91 | 95.3 |
HORVU0Hr1G013950.21 | Barley | nucleus | 81.18 | 82.34 |
Zm00001d034571_P001 | Maize | nucleus | 54.21 | 54.21 |
OQU90776 | Sorghum | nucleus, plastid | 45.22 | 52.96 |
TraesCS2A01G245700.2 | Wheat | nucleus | 51.97 | 48.94 |
Os03t0809200-01 | Rice | cytosol, nucleus | 12.64 | 45.92 |
Zm00001d024285_P001 | Maize | nucleus | 22.75 | 38.03 |
GSMUA_Achr9P09280_001 | Banana | nucleus | 9.27 | 35.48 |
GSMUA_Achr6P00170_001 | Banana | nucleus | 32.02 | 30.4 |
GSMUA_Achr4P33130_001 | Banana | nucleus | 30.06 | 29.08 |
TraesCS6A01G087400.2 | Wheat | nucleus | 26.97 | 27.67 |
TraesCS5A01G115300.2 | Wheat | nucleus | 27.53 | 25.26 |
TraesCS1A01G409800.2 | Wheat | nucleus | 24.44 | 22.77 |
TraesCS4A01G073000.4 | Wheat | nucleus | 24.16 | 21.29 |
Protein Annotations
Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF125 | SMART:SM00338 |
SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS5A01G460800 | EnsemblPlants:TraesCS5A01G460800.2 | InterPro:bZIP | TIGR:cd14702 | SEG:seg |
Description
No Description!
Coordinates
chr5A:-:641119348..641122354
Molecular Weight (calculated)
36700.5 Da
IEP (calculated)
9.227
GRAVY (calculated)
-0.683
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSATSG DDRPPAAGGG TPAQAHAEWA ASMHAYYAAA ASAAGHPYAA WPLPPQAQQH GLVAAGPGAA YGAPVPFPMY HHPAAAYYAH AHASMAAGVP
101: YMAGESASAA GKGKRVGKTQ RVPSGEINSS SGSGDAGSQG SSEKGDAGAN QKGSSSSAKR RKSGAAKTEG EPSQAATVQN AVTEPPLEDK ERSASKLLVL
201: APGRAALTSA APNLNIGMDP LSASPSSLVQ GEVNAAASSQ SNASLSQMDE RELKRERRKQ SNRESARRSR LRKQQECEEL AQKVSELTAA NGTLRSELDQ
301: LKKDCKTMET ENKKLMGKIL SHDDKMQQSE GPSVVTTLSI QVEAPEPHQG GHGKAS
101: YMAGESASAA GKGKRVGKTQ RVPSGEINSS SGSGDAGSQG SSEKGDAGAN QKGSSSSAKR RKSGAAKTEG EPSQAATVQN AVTEPPLEDK ERSASKLLVL
201: APGRAALTSA APNLNIGMDP LSASPSSLVQ GEVNAAASSQ SNASLSQMDE RELKRERRKQ SNRESARRSR LRKQQECEEL AQKVSELTAA NGTLRSELDQ
301: LKKDCKTMET ENKKLMGKIL SHDDKMQQSE GPSVVTTLSI QVEAPEPHQG GHGKAS
001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QGSIRKPSFG QMLADASSQS TTGEIQGSVP MKPVAPGTNL
201: NIGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RVESLSNENQ SLRDELQRLS SECDKLKSEN NSIQDELQRV LGAEAVANLE
301: QNAAGSKDGE GTN
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QGSIRKPSFG QMLADASSQS TTGEIQGSVP MKPVAPGTNL
201: NIGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RVESLSNENQ SLRDELQRLS SECDKLKSEN NSIQDELQRV LGAEAVANLE
301: QNAAGSKDGE GTN
Arabidopsis Description
GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.