CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034571_P001	Maize	nucleus	82.24	70.22
Os03t0809200-01	Rice	cytosol, nucleus	18.75	58.16
HORVU0Hr1G013950.21	Barley	nucleus	52.96	45.87
TraesCS5A01G460800.2	Wheat	nucleus	52.96	45.22
Zm00001d024285_P001	Maize	nucleus	31.58	45.07
TraesCS5B01G470600.1	Wheat	nucleus	52.63	44.82
TraesCS5D01G473000.1	Wheat	nucleus	52.96	44.48
TraesCS3B01G545800.1	Wheat	nucleus	28.95	38.1
GSMUA_Achr9P09280_001	Banana	nucleus	11.18	36.56
GSMUA_Achr6P00170_001	Banana	nucleus	32.57	26.4
GSMUA_Achr4P33130_001	Banana	nucleus	29.93	24.73
OQU88693	Sorghum	nucleus	52.3	24.09
EES04440	Sorghum	nucleus	27.3	23.71
KXG23316	Sorghum	nucleus	27.3	21.56
OQU92933	Sorghum	nucleus	26.32	20.94
EES18712	Sorghum	nucleus	23.36	18.59
KXG33037	Sorghum	nucleus	21.38	13.1

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A0A1Z5S4T2	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	EnsemblPlants:OQU90776	ProteinID:OQU90776	ProteinID:OQU90776.1	PFAM:PF00170	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF155	SMART:SM00338	EnsemblPlantsGene:SORBI_3001G044300	SUPFAM:SSF57959
UniParc:UPI000B8B9F33	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:3302606..3305292

Molecular Weight (calculated)

32215.4 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.704

Length

304 amino acids

Sequence
(BLAST)

001: MAAAAAAAGA PYGTPVPFHP AYYATHASMA TVNAGHPPSI VSFSSVPYPS AEPVAVAEGK GKRKSPGAPS VGCTSGSSAG GSENSSDKRD ASAHHKVLPS
101: VKRRKSSGAN VQGEPSQAAT GQDAAAESRI TAKKRSAAKL SISTPEMAAT SNVRPNLNIG MELWSDSPVK AETSGQGEIY AAAPSQLDSA LSMMDERELK
201: RERRKQSNRE SARRSRLRKQ QECEELAQKV TDLTAINGTL RSELDELKKA CEDMEAENSQ LMGELEQFEA PSVVTTLSIQ IDTSKAHHRS SDQHGNRNNT
301: DSKV

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.