CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005244_P002	Maize	nucleus	51.67	89.74
Zm00001d019166_P002	Maize	nucleus	49.09	83.51
Os07t0209800-01	Rice	nucleus	48.33	82.22
TraesCS2B01G269600.2	Wheat	nucleus	44.55	77.78
TraesCS2D01G236200.3	Wheat	nucleus	44.39	77.31
TraesCS2A01G245700.2	Wheat	nucleus	44.09	76.98
HORVU2Hr1G055230.2	Barley	nucleus	14.55	69.57
HORVU2Hr1G055160.2	Barley	extracellular, mitochondrion, plastid, vacuole	33.18	66.77
OQU90776	Sorghum	nucleus, plastid	24.09	52.3
GSMUA_Achr9P09280_001	Banana	nucleus	5.61	39.78
GSMUA_Achr6P00170_001	Banana	nucleus	20.61	36.27
GSMUA_Achr4P33130_001	Banana	nucleus	19.55	35.05
EES04440	Sorghum	nucleus	17.12	32.29
KXG23316	Sorghum	nucleus	18.33	31.43
OQU92933	Sorghum	nucleus	14.85	25.65
EES18712	Sorghum	nucleus	14.09	24.35
KXG33037	Sorghum	nucleus	13.79	18.35

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8078432	UniProt:A0A1W0W2W1	ncoils:Coil	GO:GO:0003674
GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR004827	EnsemblPlants:OQU88693	ProteinID:OQU88693	ProteinID:OQU88693.1	PFAM:PF00170
PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF125	SMART:SM00338
EnsemblPlantsGene:SORBI_3002G076100	SUPFAM:SSF57959	unigene:Sbi.10712	UniParc:UPI0009DC8592	InterPro:bZIP	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:7898883..7903826

Molecular Weight (calculated)

68967.7 Da

IEP (calculated)

10.796

GRAVY (calculated)

-0.641

Length

660 amino acids

Sequence
(BLAST)

001: MTDKVGSQQS TFSSLTRVTY QARRAATGRL APVAQGPRPS TTRAAGRFPS GLGACRAVLL RAATQGRGSR RVRLSPHVRT TSHPPTPTDS RARSPTLTHR
101: AHHLYGVPSP PSSLTARPPN DYLSLHWHHR PSPPPPVIAY ASPAPRTHPR PSVADAWARV PKSAVTVSIP LADAPGPAEA QANRVTPRRR AAVLRAHGKA
201: YTGTGGGRAP NPSEAGAFLL LAGTAAAGWL LPHTAPPVGS PPATRSTRPT TPKPTDRHRC SLARFRPGRT GGLQISSPAP RGLTDPHGVQ PKPPEPPAAA
301: AVVAAAAAAV PPQTHAEWAA SLQAYYAAAG HHPYAWPAQH LMAAAAAGAP FGTPVPFPVY HPGAAAAYYA HASMAAGVPY PTSEAVPAVV PAAPLPEGKG
401: KGKGGGASPE KGSSGAPSGE DASRSGDSGS DESSDTRDDD TDHKDSSAPK KRKSGNTSAE GEPSQTAVVR YAAVESPYPT KGRSASKLPV SAPGRAALPS
501: ATPNLNIGMD IWNASPALAV PAVQGEANPG LALARRDGVT QLDERELKRE RRKQSNRESA RRSRLRKQQE CEELARKVAD LTTENSALRA ELDNLKKACQ
601: DMEAENSRLL GPSVTTTLGM SIDPPKVQHH DDEGQLHKKS SNNSNGNYAG VSHKPEANTR

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.