Factsheet for TraesCS2D01G236200.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G245700.2	Wheat	nucleus	97.89	98.15
TraesCS2B01G269600.2	Wheat	nucleus	97.36	97.62
HORVU2Hr1G055230.2	Barley	nucleus	31.93	87.68
Os07t0209800-01	Rice	nucleus	81.53	79.64
Zm00001d005244_P002	Maize	nucleus	76.78	76.58
HORVU2Hr1G055160.2	Barley	extracellular, mitochondrion, plastid, vacuole	63.85	73.78
Zm00001d019166_P002	Maize	nucleus	74.14	72.42
TraesCS5D01G473000.1	Wheat	nucleus	49.87	52.21
OQU88693	Sorghum	nucleus	77.31	44.39
GSMUA_Achr9P09280_001	Banana	nucleus	9.23	37.63
GSMUA_Achr6P00170_001	Banana	nucleus	34.56	34.93
GSMUA_Achr4P33130_001	Banana	nucleus	32.72	33.7
TraesCS5D01G124600.1	Wheat	nucleus	29.02	28.35
TraesCS4D01G230200.3	Wheat	nucleus	25.86	24.26
TraesCS1D01G417100.1	Wheat	nucleus	23.75	22.39

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
PFAM:PF00170	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF125
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:TraesCS2D01G236200	EnsemblPlants:TraesCS2D01G236200.3	InterPro:bZIP	TIGR:cd14702
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:231596336..231603813

Molecular Weight (calculated)

39504.6 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.664

Length

379 amino acids

Sequence
(BLAST)

001: MASSSDEQPK PPEPPAAAVA VATTAPQSHS EWAASMQAFY ASGGHPYAAW PAQQLMAAAA ASGTSYGAPV PFPMYHPGAA MAYYAHASMA AGVPYPTAEA
101: VAAAAAAPVV AEGKGKAKGG GVSPEKGSSA APSGDDASQS CESGSDESSD TRDYDTDQKD SSAPKKRKSG NTSAEGEPSQ AAAVPYAAVE SPYQLKGRSA
201: SKLPVSAPGR AALPNATPNL NIGIDLWSAS QSLAVIPVQG EANPGLALAR CDGVGQLQDE REIKRERRKQ SNRESARRSR LRKQQECEEL SRKVAELTTE
301: NNALRTELDQ LKKACEDMEA QNAQLMSQEP AAVTTTLGMS IAAPKVQHHD DEGKLHKKAN NNSNGKYVGG SHKLEANPR

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.