Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P09280_001 | Banana | nucleus | 24.64 | 36.56 |
| TraesCS2B01G269600.2 | Wheat | nucleus | 89.86 | 32.8 |
| TraesCS2A01G245700.2 | Wheat | nucleus | 88.41 | 32.28 |
| TraesCS2D01G236200.3 | Wheat | nucleus | 87.68 | 31.93 |
| Os07t0209800-01 | Rice | nucleus | 74.64 | 26.55 |
| Zm00001d005244_P002 | Maize | nucleus | 69.57 | 25.26 |
| Zm00001d019166_P002 | Maize | nucleus | 67.39 | 23.97 |
| HORVU0Hr1G013950.21 | Barley | nucleus | 43.48 | 17.09 |
| OQU88693 | Sorghum | nucleus | 69.57 | 14.55 |
| GSMUA_Achr6P00170_001 | Banana | nucleus | 36.96 | 13.6 |
| GSMUA_Achr4P33130_001 | Banana | nucleus | 35.51 | 13.32 |
| HORVU6Hr1G016240.10 | Barley | nucleus | 31.88 | 12.46 |
| HORVU1Hr1G090030.11 | Barley | nucleus, plastid | 34.06 | 10.28 |
| HORVU5Hr1G029130.19 | Barley | nucleus | 28.26 | 10.03 |
| HORVU4Hr1G064120.18 | Barley | nucleus | 28.99 | 9.9 |
| HORVU2Hr1G055160.2 | Barley | extracellular, mitochondrion, plastid, vacuole | 5.8 | 2.44 |
| HORVU1Hr1G089970.10 | Barley | cytosol | 5.07 | 1.89 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | UniProt:A0A287I1M7 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU2Hr1G055230 | EnsemblPlants:HORVU2Hr1G055230.2 | InterPro:IPR004827 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF125 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000B487C2D | InterPro:bZIP |
Description
No Description!
Coordinates
chrchr2H:+:342112394..342120416
Molecular Weight (calculated)
15529.4 Da
IEP (calculated)
9.329
GRAVY (calculated)
-1.120
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTTLACVE GEGVGAIDER EMKRERRKQS NRESARRSRL RKQQECEELS RKVAELTTEN NALRTELDQL KKACEDMEAQ NARLMSQEPA AVTTTLGMSI
101: AVPKMQQHED EGKLHKKANN NSNGKYVGGS RKLEANPR
101: AVPKMQQHED EGKLHKKANN NSNGKYVGGS RKLEANPR
001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGNERELKRE RRKQSNRESA RRSRLRKQAE TEELARKVEA LTAENMALRS ELNQLNEKSD KLRGANATLL
301: DKLKCSEPEK RVPANMLSRV KNSGAGDKNK NQGDNDSNST SKLHQLLDTK PRAKAVAAG
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGNERELKRE RRKQSNRESA RRSRLRKQAE TEELARKVEA LTAENMALRS ELNQLNEKSD KLRGANATLL
301: DKLKCSEPEK RVPANMLSRV KNSGAGDKNK NQGDNDSNST SKLHQLLDTK PRAKAVAAG
Arabidopsis Description
GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.