Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G460800.2 | Wheat | nucleus | 95.3 | 96.91 |
| TraesCS3B01G545800.1 | Wheat | nucleus | 56.63 | 88.74 |
| HORVU0Hr1G013950.21 | Barley | nucleus | 79.28 | 81.77 |
| Zm00001d034571_P001 | Maize | nucleus | 53.04 | 53.93 |
| OQU90776 | Sorghum | nucleus, plastid | 44.48 | 52.96 |
| TraesCS2D01G236200.3 | Wheat | nucleus | 52.21 | 49.87 |
| Os03t0809200-01 | Rice | cytosol, nucleus | 12.71 | 46.94 |
| Zm00001d024285_P001 | Maize | nucleus | 21.82 | 37.09 |
| GSMUA_Achr9P09280_001 | Banana | nucleus | 9.39 | 36.56 |
| GSMUA_Achr6P00170_001 | Banana | nucleus | 30.94 | 29.87 |
| GSMUA_Achr4P33130_001 | Banana | nucleus | 29.83 | 29.35 |
| TraesCS5D01G124600.1 | Wheat | nucleus | 27.35 | 25.52 |
| TraesCS1D01G417100.1 | Wheat | nucleus | 24.59 | 22.14 |
| TraesCS4D01G230200.3 | Wheat | nucleus | 24.59 | 22.03 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF125 | SMART:SM00338 |
| SUPFAM:SSF57959 | EnsemblPlantsGene:TraesCS5D01G473000 | EnsemblPlants:TraesCS5D01G473000.1 | InterPro:bZIP | TIGR:cd14702 | SEG:seg |
Description
No Description!
Coordinates
chr5D:-:513468332..513471428
Molecular Weight (calculated)
37055.8 Da
IEP (calculated)
8.964
GRAVY (calculated)
-0.709
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSATSG DDRPPAGGGG GGGGTPAQAH AEWAASMHAY YAAAASAAGH PYAAWPLPPQ AQQHGLVAAG PGAAYGAPVP FPMYHHPAAA YYAHAHAHAS
101: MAAGVPYMAG ESASAAGKGK RVGKTRRAPS GEINSSSGSG DAGSQGSSEK GDTGANQKGS SSSAKRRKSG AANTEGEPSQ AATVQNAATQ PPLEDKERSA
201: SKLLVLAPGR AALPSAAPNL NIGMDPLSAS PSSLVQGEVN AAASSQSNAS LSQMDERELK RERRKQSNRE SARRSRLRKQ QECEELAQKV SELTAANGTL
301: KSELDQLKKD CKTMETENKQ LMGKILSHDD KMQQSEGPSV VTTLSIQVEA PEPHQGGDGK AS
101: MAAGVPYMAG ESASAAGKGK RVGKTRRAPS GEINSSSGSG DAGSQGSSEK GDTGANQKGS SSSAKRRKSG AANTEGEPSQ AATVQNAATQ PPLEDKERSA
201: SKLLVLAPGR AALPSAAPNL NIGMDPLSAS PSSLVQGEVN AAASSQSNAS LSQMDERELK RERRKQSNRE SARRSRLRKQ QECEELAQKV SELTAANGTL
301: KSELDQLKKD CKTMETENKQ LMGKILSHDD KMQQSEGPSV VTTLSIQVEA PEPHQGGDGK AS
001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QGSIRKPSFG QMLADASSQS TTGEIQGSVP MKPVAPGTNL
201: NIGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RVESLSNENQ SLRDELQRLS SECDKLKSEN NSIQDELQRV LGAEAVANLE
301: QNAAGSKDGE GTN
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QGSIRKPSFG QMLADASSQS TTGEIQGSVP MKPVAPGTNL
201: NIGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RVESLSNENQ SLRDELQRLS SECDKLKSEN NSIQDELQRV LGAEAVANLE
301: QNAAGSKDGE GTN
Arabidopsis Description
GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.