CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0239400-01	Rice	nucleus	88.22	87.99
TraesCS4B01G229100.2	Wheat	nucleus	85.34	80.69
TraesCS4D01G230200.3	Wheat	nucleus	85.08	80.45
HORVU4Hr1G064120.18	Barley	nucleus	84.82	80.2
TraesCS4A01G073000.4	Wheat	nucleus	84.56	79.95
Zm00001d047967_P003	Maize	nucleus	82.2	74.23
Zm00001d028372_P005	Maize	nucleus	93.19	58.75
KXG23316	Sorghum	nucleus	44.5	44.16
EES04440	Sorghum	nucleus	38.22	41.71
EES18712	Sorghum	nucleus	30.1	30.1
OQU90776	Sorghum	nucleus, plastid	20.94	26.32
KXG33037	Sorghum	nucleus	24.87	19.15
OQU88693	Sorghum	nucleus	25.65	14.85

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A0A1B6QPF2	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	ProteinID:KXG39800.1	ProteinID:KXG39801.1	ProteinID:KXG39802.1	InterPro:MFMR	EnsemblPlants:OQU92933
ProteinID:OQU92933	ProteinID:OQU92933.1	ProteinID:OQU92934.1	ProteinID:OQU92935.1	PFAM:PF00170	PFAM:PF07777
PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF142	SMART:SM00338
EnsemblPlantsGene:SORBI_3001G441400	SUPFAM:SSF57959	UniParc:UPI0001C80A99	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:71917162..71927876

Molecular Weight (calculated)

41010.4 Da

IEP (calculated)

9.792

GRAVY (calculated)

-1.020

Length

382 amino acids

Sequence
(BLAST)

001: MGKGDVATRS KSQKSSAIQN EQSTPTNPPT AYPDWSQFQA YYNAPGTAPV TPPAFFHSSV APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQAPM
101: PPGSHPYSPY PMQSPNGTVQ TPTSGAGGTE TNKSNKNKRK TPLKRSKGSL GSLDVVAVKN NKSPAKPQAS SSNEGSSQSE SGSGSSSEGS STNSKSSSRA
201: KDGSEQGQGN DARSKGTQSS AVEPTQPSSG PVVLNPMMPF WPVPPPMAGP ATTLNMGVDY WGTPASVPMH GKVIAAPTSA PSSNSRDIVL SDPAIQDERE
301: MKRQKRKQSN RESARRSRLR KQAEWEEVAN RADLLKQENS SLKEELKQLQ EKCDSLTSEN TSLHEKLKVL EDEKSNGNWC KD

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.