CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04440
KXG23316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	EES04440	AT1G32150.1	18315949
AT2G46270.1	KXG23316	AT1G32150.1	18315949
AT2G46270.1	EES04440	AT2G35530.1	18315949
AT2G46270.1	KXG23316	AT2G35530.1	18315949
AT4G01120.1	EES04440	AT1G32150.1	18315949
AT4G01120.1	KXG23316	AT1G32150.1	18315949
AT4G01120.1	EES04440	AT2G35530.1	18315949
AT4G01120.1	KXG23316	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043992_P001	Maize	nucleus	61.9	81.43
Os01t0658900-01	Rice	nucleus	47.38	65.28
EES18712	Sorghum	nucleus	38.71	50.26
GSMUA_Achr6P32000_001	Banana	nucleus	28.63	37.67
CDX95685	Canola	nucleus	21.77	36.0
GSMUA_Achr9P05310_001	Banana	nucleus	30.04	35.82
AT2G46270.1	Thale cress	nucleus	26.81	34.82
VIT_15s0046g01440.t01	Wine grape	nucleus	30.04	34.65
KRG97109	Soybean	nucleus	29.44	34.35
GSMUA_Achr1P05050_001	Banana	nucleus	29.44	34.27
KRH68860	Soybean	nucleus	29.23	34.12
Bra004550.1-P	Field mustard	nucleus	26.01	34.04
CDY07176	Canola	nucleus	24.4	33.33
Bra037382.1-P	Field mustard	nucleus	24.6	33.24
PGSC0003DMT400000266	Potato	nucleus	27.82	33.09
CDY48506	Canola	nucleus	23.99	32.6
Solyc01g095460.2.1	Tomato	nucleus	27.42	32.54
AT4G01120.1	Thale cress	nucleus	23.59	32.5
KRH06537	Soybean	nucleus	27.42	32.08
KRH47979	Soybean	nucleus	27.22	31.84
CDY42029	Canola	nucleus	26.21	31.4
PGSC0003DMT400084203	Potato	nucleus	25.4	30.51
CDX80004	Canola	golgi	26.21	29.35
VIT_02s0025g01020.t01	Wine grape	nucleus	23.19	28.89
Solyc05g050220.2.1	Tomato	nucleus	24.19	28.85
KXG23316	Sorghum	nucleus	19.76	25.45
EES04440	Sorghum	nucleus	17.74	25.14
OQU92933	Sorghum	nucleus	19.15	24.87
OQU90776	Sorghum	nucleus, plastid	13.1	21.38
OQU88693	Sorghum	nucleus	18.35	13.79

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A0A1B6Q538	ncoils:Coil	GO:GO:0000976	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EnsemblPlants:KXG33037
ProteinID:KXG33037	ProteinID:KXG33037.1	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	ScanProsite:PS00036
PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF345	SMART:SM00338	EnsemblPlantsGene:SORBI_3003G244100	SUPFAM:SSF57959
UniParc:UPI00081AB798	InterPro:bZIP	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:58330868..58336399

Molecular Weight (calculated)

52843.9 Da

IEP (calculated)

10.708

GRAVY (calculated)

-0.763

Length

496 amino acids

Sequence
(BLAST)

001: MATRHGSRLG EHAGTDMGRG ARWPSSEATA GTRRPAPEPT RAHATGVTHS TRTVVGLRRP HSSPHHPARV ALRPADVGPT PPVSSKSNAP PRRTCTHRHT
101: HLLASPPHRG AAAASPFRVP PPLAVRVSPS ADPRDAASTS TPTRRGRRFQ DQPAIYPCLD WSTMQAYYGQ GVLPPAFFNP GIAPGHVPPP YVWCPQNMPP
201: AAFGKPYAAI YPHAGGFLHP FMPLMVNPLS AEPAKSANSK DNSLNKKLKE IDGTAVSSGN SEKTSGDYSL EGSSDGNNPK VSGTPKKRSF DDRTTSETCG
301: VSATNDKPGE SGRLATLPNV HIPDATMKPS VSTGSDFKVS GATSTEWPAK DDKESKRERR KQSNRESARR SRLRKQAETE ELARKVELLT AENTSLRNEI
401: SKLTDSSQKL RMENAALMEK LAGGTSDQAQ EASAGHQTTA TAPPPSARVV KNFLSMMDVE GPSRGGGSRR TEHGAPRLRQ LLSSGGPLAA DAVAAS

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.