Factsheet for GSMUA_Achr9P05310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P04530_001
GSMUA_Achr4P11610_001
GSMUA_Achr4P18980_001
GSMUA_Achr4P27400_001
GSMUA_Achr5P14150_001
GSMUA_Achr6P01090_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46270.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT2G46270.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT2G46270.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT2G46270.1	GSMUA_AchrUn_...	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr4P04530_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr4P11610_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr4P18980_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr4P27400_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr5P14150_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr6P01090_001	AT1G32150.1	18315949
AT4G01120.1	GSMUA_AchrUn_...	AT1G32150.1	18315949
AT4G01120.1	GSMUA_Achr4P04530_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr4P11610_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr4P18980_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr4P27400_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr5P14150_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_Achr6P01090_001	AT2G35530.1	18315949
AT4G01120.1	GSMUA_AchrUn_...	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P32000_001	Banana	nucleus	69.47	76.66
Os01t0658900-01	Rice	nucleus	39.18	45.28
GSMUA_Achr1P05050_001	Banana	nucleus	45.19	44.13
Zm00001d039065_P006	Maize	nucleus	39.18	43.24
TraesCS1A01G409800.2	Wheat	nucleus	39.66	43.19
Os05t0569300-01	Rice	nucleus	38.94	42.63
VIT_15s0046g01440.t01	Wine grape	nucleus	43.99	42.56
EES18712	Sorghum	nucleus	38.94	42.41
KRH68860	Soybean	nucleus	42.55	41.65
KRG97109	Soybean	nucleus	42.31	41.41
PGSC0003DMT400000266	Potato	nucleus	41.11	41.01
Solyc01g095460.2.1	Tomato	nucleus	41.11	40.91
TraesCS1D01G417100.1	Wheat	nucleus	39.42	40.8
KRH06537	Soybean	nucleus	41.11	40.33
KRH47979	Soybean	nucleus	41.11	40.33
AT2G46270.1	Thale cress	nucleus	37.02	40.31
CDY07176	Canola	nucleus	35.1	40.22
Zm00001d040500_P001	Maize	nucleus	18.75	40.21
TraesCS1B01G439800.1	Wheat	nucleus	38.94	40.2
Zm00001d025638_P001	Maize	nucleus	18.27	39.79
Zm00001d043908_P001	Maize	nucleus	18.27	39.79
Zm00001d043992_P001	Maize	nucleus	36.06	39.79
Bra037382.1-P	Field mustard	nucleus	34.86	39.51
CDY48506	Canola	nucleus	34.62	39.45
CDX95685	Canola	nucleus	28.37	39.33
AT4G01120.1	Thale cress	nucleus	33.89	39.17
Bra004550.1-P	Field mustard	nucleus	35.34	38.79
PGSC0003DMT400084203	Potato	nucleus	37.02	37.29
Solyc05g050220.2.1	Tomato	nucleus	36.78	36.78
HORVU1Hr1G090030.11	Barley	nucleus, plastid	39.66	36.1
CDY42029	Canola	nucleus	34.62	34.78
GSMUA_Achr9P09280_001	Banana	nucleus	7.69	34.41
VIT_02s0025g01020.t01	Wine grape	nucleus	32.21	33.67
CDX80004	Canola	golgi	35.1	32.96
GSMUA_Achr5P14150_001	Banana	nucleus	30.05	31.09
GSMUA_Achr4P04530_001	Banana	nucleus	30.77	30.99
GSMUA_AchrUn_...	Banana	nucleus	28.12	30.71
GSMUA_Achr6P01090_001	Banana	nucleus	30.05	30.27
KXG33037	Sorghum	nucleus	35.82	30.04
GSMUA_Achr4P11610_001	Banana	nucleus	20.91	29.19
GSMUA_Achr4P27400_001	Banana	nucleus	28.37	28.71
GSMUA_Achr4P33130_001	Banana	nucleus	24.28	27.45
GSMUA_Achr4P18980_001	Banana	nucleus	26.44	27.3
GSMUA_Achr6P00170_001	Banana	nucleus	24.04	26.67
HORVU1Hr1G089970.10	Barley	cytosol	22.6	25.41

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G05310_001
EnsemblPlants:GSMUA_Achr9P05310_001	EnsemblPlants:GSMUA_Achr9T05310_001	InterPro:IPR004827	UniProt:M0TXP0	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF230	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002968BB6	InterPro:bZIP	SEG:seg	:	:

Description

Putative G-box-binding factor 3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G05310_001]

Coordinates

chr9:-:3421604..3429966

Molecular Weight (calculated)

44282.5 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.722

Length

416 amino acids

Sequence
(BLAST)

001: MASNEAATPP KSNKASSPVQ SRETPANPPY ADWATMQAYY GHGMIPPTYL SGHVPHPYMW GPQPLIPPFG SPYTAIYPLG GVYSHASVPL SSHTHCQGIA
101: PSPSPAASEA VVMATPLSVE MPAKSPRNKD RRLVKKLKGL DGLALSGGNG STENRDQADG NSEYNSTEGS SYGSDGDNAE GGIKDQRKRR SEDVPSSDNA
201: TNSEQVNPGH TEETATSSKP AAGVTGAAAI TAKPVGNIPS SVPAAGMDIR VSNASKMKAI GLPVPVATGA VFPSHNGDER ELKKERRKQS NRESARRSRL
301: RKQAETEELS AKVETLSAEN TSLRSEINCL MKNSDKLRLE NSALMEELNN VQSDHVGNTM GVRIRPAVAE NFLSMIENQS SISRMTQQDG DSSDQSSGKL
401: HQLLNNSPRR DAVAAS

Best Arabidopsis Sequence Match ( AT2G46270.3 )
(BLAST)

001: MGNSSEEPKP PTKSDKPSSP PVDQTNVHVY PDWAAMQAYY GPRVAMPPYY NSAMAASGHP PPPYMWNPQH MMSPYGAPYA AVYPHGGGVY AHPGIPMGSL
101: PQGQKDPPLT TPGTLLSIDT PTKSTGNTDN GLMKKLKEFD GLAMSLGNGN PENGADEHKR SRNSSETDGS TDGSDGNTTG ADEPKLKRSR EGTPTKDGKQ
201: LVQASSFHSV SPSSGDTGVK LIQGSGAILS PGVSANSNPF MSQSLAMVPP ETWLQNEREL KRERRKQSNR ESARRSRLRK QAETEELARK VEALTAENMA
301: LRSELNQLNE KSDKLRGANA TLLDKLKCSE PEKRVPANML SRVKNSGAGD KNKNQGDNDS NSTSKLHQLL DTKPRAKAVA AG

Arabidopsis Description

GBF3G-box-binding factor 3 [Source:UniProtKB/Swiss-Prot;Acc:P42776]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.