Factsheet for Solyc02g062950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g005290.2.1
Solyc08g076100.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	Solyc08g005290.2.1	AT1G32150.1	18315949
AT4G36730.1	Solyc08g076100.2.1	AT1G32150.1	18315949
AT4G36730.1	Solyc08g005290.2.1	AT2G35530.1	18315949
AT4G36730.1	Solyc08g076100.2.1	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085610.2.1	Tomato	nucleus	58.06	69.72
KRH69948	Soybean	nucleus	65.69	66.27
KRH08310	Soybean	nucleus	65.69	66.27
VIT_04s0023g01360.t01	Wine grape	nucleus	67.74	63.46
AT4G36730.1	Thale cress	nucleus	55.72	60.32
KRH76850	Soybean	nucleus	60.41	59.03
CDY24770	Canola	nucleus	53.96	58.79
Bra010572.1-P	Field mustard	nucleus	53.67	58.47
CDY35476	Canola	nucleus	53.37	58.15
CDX69240	Canola	nucleus	53.37	58.15
Bra011701.1-P	Field mustard	nucleus	53.37	58.15
CDX75592	Canola	nucleus	53.08	57.83
KRH28623	Soybean	nucleus	60.12	55.56
Solyc08g005290.2.1	Tomato	nucleus	39.0	33.5
Solyc08g076100.2.1	Tomato	nucleus	39.59	33.01
Solyc01g095460.2.1	Tomato	nucleus	35.78	29.19
Solyc05g050220.2.1	Tomato	nucleus	34.6	28.37

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4B6I3	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc02g062950.2	EnsemblPlants:Solyc02g062950.2.1
UniParc:UPI0002768469	InterPro:bZIP	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:34890261..34899997

Molecular Weight (calculated)

36595.2 Da

IEP (calculated)

5.732

GRAVY (calculated)

-1.011

Length

341 amino acids

Sequence
(BLAST)

001: MGAGEESTPA KPSKVTSTQE TQATPSYPDW SSMQAYYGAG ATPPFFPSTV GSPTPHPYMW GAQHPLMPPY GAPVPYPALY PPAGVYAHPN MPMTPNTLQA
101: NPESDSKAPD GKDQNTSKKL KGCSGGKAGE SGKAASGSGN DGGATRSAES GSEGSSDEND ENDNHEFSAD KNRSFDLMLA NGANAQTNPA TGNPVAMPAP
201: NLNIGMDLWN APSGGPGMIK MRSNQSGVSP APGMGREWIQ DERELKRQKR KQSNRESARR SRLRKQAECE ELQHKVETLS NENHGLKEEL RKVSEECEKL
301: TSENNSIKDE LTRLYGPEAV SKLESNANAM RLQSNVEEAK S

Best Arabidopsis Sequence Match ( AT4G36730.2 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QGSIRKPSFG QMLADASSQS TTGEIQGSVP MKPVAPGTNL
201: NIGMDLWSSQ AGVPVKDERE LKRQKRKQSN RESARRSRLR KQAECEQLQQ RVESLSNENQ SLRDELQRLS SECDKLKSEN NSIQDELQRV LGAEAVANLE
301: QNAAGSKDGE GTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.