Factsheet for VIT_04s0023g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g02250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	VIT_02s0012g02250.t01	AT1G32150.1	18315949
AT4G36730.1	VIT_02s0012g02250.t01	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08310	Soybean	nucleus	68.41	73.67
KRH69948	Soybean	nucleus	67.86	73.08
Solyc02g062950.2.1	Tomato	nucleus	63.46	67.74
KRH76850	Soybean	nucleus	63.74	66.48
Solyc02g085610.2.1	Tomato	nucleus	51.37	65.85
AT4G36730.1	Thale cress	nucleus	56.32	65.08
CDX75592	Canola	nucleus	53.85	62.62
Bra011701.1-P	Field mustard	nucleus	53.57	62.3
CDX69240	Canola	nucleus	53.57	62.3
CDY24770	Canola	nucleus	53.02	61.66
Bra010572.1-P	Field mustard	nucleus	52.47	61.02
CDY35476	Canola	nucleus	52.47	61.02
KRH28623	Soybean	nucleus	61.81	60.98
VIT_18s0001g12120.t01	Wine grape	nucleus	64.84	59.3
PGSC0003DMT400032960	Potato	nucleus	61.54	56.0
VIT_02s0012g02250.t01	Wine grape	nucleus	42.86	37.77
VIT_15s0046g01440.t01	Wine grape	nucleus	36.26	30.7
VIT_02s0025g01020.t01	Wine grape	nucleus	31.87	29.15

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100258205	wikigene:100258205	MapMan:15.5.4.1	ProteinID:CBI17558	ProteinID:CBI17558.3
ncoils:Coil	UniProt:D7SPH9	EMBL:FN594959	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
EntrezGene:LOC100258205	wikigene:LOC100258205	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI00015CB0B5	ArrayExpress:VIT_04s0023g01360	EnsemblPlantsGene:VIT_04s0023g01360	EnsemblPlants:VIT_04s0023g01360.t01	unigene:Vvi.12325	RefSeq:XP_002272761
RefSeq:XP_002272761.1	RefSeq:XP_019075015.1	RefSeq:XP_019075016.1	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:17832626..17863952

Molecular Weight (calculated)

38143.9 Da

IEP (calculated)

5.813

GRAVY (calculated)

-0.821

Length

364 amino acids

Sequence
(BLAST)

001: MGAGEDTTPT KPSKPTSSAQ EMPTTPSYPE WSSSMQAYYG PGATPPPFFA PSVASPTPHP YLWGSQHPLI PPYGTPVPYS ALYPPGGVYA HPNLATAPSA
101: AHLNPELEGK GPEGKDKASA KKSKGTSGNT VKGGESGKAA SGSGNDGASP SAESGSEGSS DASDENTNQQ EFASSKKGSF NQMLADANAQ NNISGTSVQA
201: SVPGKPVISM PATNLNIGMD LWSASPGGSG ATKLRPNPSG ISSSVAPAAM VGREGVMPDQ WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQAKVE
301: TLSTENTALR DELQRLSEEC EKLTSENNSI KEELTRVCGA DAVAANLKEK NPTQLQSQGV EGNS

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.