Factsheet for Bra010572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005335.1-P
Bra017316.1-P
Bra023012.1-P
Bra023243.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36730.1	Bra023243.1-P	AT1G32150.1	18315949
AT4G36730.1	Bra005335.1-P	AT2G35530.1	18315949
AT4G36730.1	Bra017316.1-P	AT2G35530.1	18315949
AT4G36730.1	Bra023012.1-P	AT2G35530.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24770	Canola	nucleus	98.4	98.4
CDY35476	Canola	nucleus	96.17	96.17
Bra011701.1-P	Field mustard	nucleus	89.14	89.14
AT4G36730.1	Thale cress	nucleus	83.71	83.17
KRH08310	Soybean	nucleus	61.02	56.51
KRH69948	Soybean	nucleus	60.06	55.62
Solyc02g062950.2.1	Tomato	nucleus	58.47	53.67
VIT_04s0023g01360.t01	Wine grape	nucleus	61.02	52.47
KRH76850	Soybean	nucleus	54.31	48.71
Solyc02g085610.2.1	Tomato	nucleus	43.77	48.24
KRH28623	Soybean	nucleus	54.95	46.61
VIT_18s0001g12120.t01	Wine grape	nucleus	57.19	44.97
PGSC0003DMT400032960	Potato	nucleus	51.44	40.25
Bra023243.1-P	Field mustard	nucleus	37.38	33.24
Bra005335.1-P	Field mustard	nucleus	39.94	29.62
Bra004550.1-P	Field mustard	nucleus	35.46	29.29
Bra037382.1-P	Field mustard	nucleus	34.19	29.16
Bra023012.1-P	Field mustard	nucleus	36.74	28.54
KRG89193	Soybean	nucleus	22.68	23.83
Bra017316.1-P	Field mustard	nucleus	19.49	23.11

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra010572	EnsemblPlants:Bra010572.1	EnsemblPlants:Bra010572.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M4D272	InterPro:MFMR	PFAM:PF00170
PFAM:PF07777	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF123	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI00025461D1	InterPro:bZIP	SEG:seg	:	:

Description

AT4G36730 (E=6e-141) GBF1 | GBF1; sequence-specific DNA binding / transcription factor

Coordinates

chrA08:-:15249566..15251261

Molecular Weight (calculated)

33775.0 Da

IEP (calculated)

6.526

GRAVY (calculated)

-1.078

Length

313 amino acids

Sequence
(BLAST)

001: MGTSEEKTPF KPSKPASSAQ DTPPTPYADW SNSMQSYYGG GATPSPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGTVYAH PGMPMPQASG
101: PTNTETVKAQ APGKKPKGNL KRKSGGGEKA PSGSGNDALS QSEESVTAGS SDENDDNANH QEQGSVRKPS FGQMLADASS QSNTTGEIQG SMPMKPLAPG
201: TNLNMGMDLW SSQTGVAVKD ERELKRQKRK QSNRESARRS RLRKQAECEQ LQQRVESLTS ENQSLRDELQ RLSGECEKLK TENNTIQDEL VRVHGPEAVA
301: NLEQNADGSK DGE

Best Arabidopsis Sequence Match ( AT4G36730.1 )
(BLAST)

001: MGTSEDKMPF KTTKPTSSAQ EVPPTPYPDW QNSMQAYYGG GGTPNPFFPS PVGSPSPHPY MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PSMPMPPNSG
101: PTNKEPAKDQ ASGKKSKGNS KKKAEGGDKA LSGSGNDGAS HSDESVTAGS SDENDENANQ QEQGSIRKPS FGQMLADASS QSTTGEIQGS VPMKPVAPGT
201: NLNIGMDLWS SQAGVPVKDE RELKRQKRKQ SNRESARRSR LRKQAECEQL QQRVESLSNE NQSLRDELQR LSSECDKLKS ENNSIQDELQ RVLGAEAVAN
301: LEQNAAGSKD GEGTN

Arabidopsis Description

GBF1Z-box binding factor 2 protein [Source:UniProtKB/TrEMBL;Acc:Q5K1L6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.