CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69240
CDX75592
CDX80004
CDX84103
CDX84198
CDX95685
CDY07176
CDY12261
CDY22589
CDY24770
CDY31695
CDY32123
CDY35476
CDY40465
CDY42029
CDY48506
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35530.1	CDX84103	AT1G32150.1	18315949
AT2G35530.1	CDY12261	AT1G32150.1	18315949
AT2G35530.1	CDY22589	AT1G32150.1	18315949
AT2G35530.1	CDX84198	AT2G35530.1	18315949
AT2G35530.1	CDY31695	AT2G35530.1	18315949
AT2G35530.1	CDY32123	AT2G35530.1	18315949
AT2G35530.1	CDY40465	AT2G35530.1	18315949
AT2G35530.1	CDY65764	AT2G35530.1	18315949
AT2G35530.1	CDX80004	AT2G46270.1	18315949
AT2G35530.1	CDX95685	AT2G46270.1	18315949
AT2G35530.1	CDY42029	AT2G46270.1	18315949
AT2G35530.1	CDY07176	AT4G01120.1	18315949
AT2G35530.1	CDY48506	AT4G01120.1	18315949
AT2G35530.1	CDX69240	AT4G36730.1	18315949
AT2G35530.1	CDX75592	AT4G36730.1	18315949
AT2G35530.1	CDY24770	AT4G36730.1	18315949
AT2G35530.1	CDY35476	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023012.1-P	Field mustard	nucleus	97.01	96.53
AT2G35530.1	Thale cress	nucleus	78.05	76.53
CDY31695	Canola	nucleus	74.06	75.19
CDY40465	Canola	nucleus	52.62	70.33
CDY12261	Canola	nucleus	61.35	64.57
CDX84198	Canola	nucleus	73.82	64.49
CDY22589	Canola	nucleus	59.85	62.66
VIT_02s0012g02250.t01	Wine grape	nucleus	58.35	56.66
KRH39598	Soybean	nucleus	56.61	54.83
Solyc08g005290.2.1	Tomato	nucleus	54.11	54.66
KRH74331	Soybean	nucleus	56.11	54.22
Solyc08g076100.2.1	Tomato	nucleus	54.36	53.3
KRH07569	Soybean	nucleus	53.62	51.68
KRH45342	Soybean	nucleus	53.62	51.56
PGSC0003DMT400047522	Potato	nucleus	48.63	50.65
GSMUA_Achr5P14150_001	Banana	nucleus	47.88	47.76
KXG23316	Sorghum	nucleus	45.64	47.53
TraesCS5A01G115300.2	Wheat	nucleus	45.64	47.16
TraesCS5B01G122000.2	Wheat	nucleus	45.64	47.16
TraesCS5D01G124600.1	Wheat	nucleus	45.64	47.16
GSMUA_Achr4P04530_001	Banana	nucleus	48.13	46.73
GSMUA_Achr4P11610_001	Banana	nucleus	34.66	46.64
Zm00001d041142_P010	Maize	nucleus	43.64	45.81
Os12t0233800-02	Rice	nucleus	35.41	45.66
GSMUA_AchrUn_...	Banana	nucleus	41.65	43.83
TraesCSU01G019200.1	Wheat	nucleus	37.66	43.77
TraesCS6B01G110100.1	Wheat	nucleus	37.91	43.55
Zm00001d039206_P001	Maize	nucleus	22.44	43.27
Os02t0128200-01	Rice	nucleus	37.41	43.23
TraesCS6A01G087400.2	Wheat	nucleus	37.41	43.23
GSMUA_Achr6P01090_001	Banana	nucleus	44.39	43.1
CDX84103	Canola	nucleus, plastid	37.16	43.06
EES04440	Sorghum	nucleus	37.41	42.86
Zm00001d015118_P001	Maize	nucleus	30.92	42.76
HORVU6Hr1G016240.10	Barley	nucleus	37.41	42.49
GSMUA_Achr4P18980_001	Banana	nucleus	42.64	42.43
HORVU5Hr1G029130.19	Barley	nucleus	39.4	40.62
GSMUA_Achr4P27400_001	Banana	nucleus	40.9	39.9
Zm00001d053967_P001	Maize	nucleus	30.92	39.49
Zm00001d024041_P002	Maize	nucleus	33.17	38.66
CDX69240	Canola	nucleus	29.43	37.7
CDX75592	Canola	nucleus	29.18	37.38
CDY32123	Canola	nucleus	14.21	37.25
CDY24770	Canola	nucleus	28.93	37.06
CDY35476	Canola	nucleus	28.93	37.06
CDX95685	Canola	nucleus	20.7	27.67
CDY48506	Canola	nucleus	23.94	26.3
CDY07176	Canola	nucleus	23.44	25.9
CDY42029	Canola	nucleus	25.94	25.12
CDX80004	Canola	golgi	26.18	23.7

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078JGH2	UniProt:A0A078JGH2	EnsemblPlants:CDY65764	ProteinID:CDY65764
ProteinID:CDY65764.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00048184001	InterPro:IPR004827	InterPro:MFMR	PFAM:PF00170	PFAM:PF07777
PFAM:PF16596	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0004EDAEE2	InterPro:bZIP	SEG:seg	:	:	:

Description

BnaA03g56410DBnaA03g56410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGH2]

Coordinates

chrLK034938:+:4864..7585

Molecular Weight (calculated)

43418.5 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.903

Length

401 amino acids

Sequence
(BLAST)

001: MANSEMEKPS KEKELKQPSS SSAPPPSQEP SSSVSAGPDW SGFQASSAPM QPHGFVTSSP QPHPYMWRVQ HMMPPYGTPP HPYVTMYPPG GMYAHPSMPP
101: GSYPYSPMPS PNGVTEASGN TTGGTEGDSK RSDVKEKLPI RRSKRILSMM KGKNNEPGKN SGASANVAYS KRHVTFLDCI GESDSDGSSE GSDANYQIDS
201: GSSQDGKDAS ENGGSANGLQ NGSVGTPLPT VSQKVPIMPN TAPGVPVPPT NLNIGMGYWG APIPGMHGKV STPVPGVFAQ MSRDGGHSQP WLQEERELKR
301: QRRKQTNREA AQRSRLRKEA EFDQLAQYTE VLSAENASLR AEMNRLKSQR EELTSENTSL KDLLLSFPPL EGINMDKDDQ EPDTIQTGFT ETKFVSYKDS
401: T

Best Arabidopsis Sequence Match ( AT2G35530.1 )
(BLAST)

001: MASNEMEKSS KEKEPKTPPP SSTAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP
101: SMPPGSYPYS PYAMPSPNGM TEVSGNTTGG TDGDAKQSEV KEKLPIKRSR GSLGSLNMIT GKNNEPGKNS GASANGAYSK SGESASDGSS EGSDGNSQND
201: SGSGLDGKDA EAASENGGSA NGPQNGSAGT PILPVSQTVP IMPMTAAGVP GPPTNLNIGM DYWGAPTSAG IPGMHGKVST PVPGVVAPGS RDGGHSQPWL
301: QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTNLRAE INKLKSQCEE LTTENTSLKD QLSLFPPLEG ISMDNDHQEP DTNQTGAAER
401: KVDSYKDST

Arabidopsis Description

BZIP16bZIP transcription factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q501B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.