CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69240
CDX75592
CDX80004
CDX84103
CDX84198
CDX95685
CDY07176
CDY12261
CDY22589
CDY24770
CDY31695
CDY32123
CDY35476
CDY40465
CDY42029
CDY48506
CDY65764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32150.1	CDX84103	AT1G32150.1	18315949
AT1G32150.1	CDY12261	AT1G32150.1	18315949
AT1G32150.1	CDY22589	AT1G32150.1	18315949
AT1G32150.1	CDX84198	AT2G35530.1	18315949
AT1G32150.1	CDY31695	AT2G35530.1	18315949
AT1G32150.1	CDY32123	AT2G35530.1	18315949
AT1G32150.1	CDY40465	AT2G35530.1	18315949
AT1G32150.1	CDY65764	AT2G35530.1	18315949
AT1G32150.1	CDX80004	AT2G46270.1	18315949
AT1G32150.1	CDX95685	AT2G46270.1	18315949
AT1G32150.1	CDY42029	AT2G46270.1	18315949
AT1G32150.1	CDY07176	AT4G01120.1	18315949
AT1G32150.1	CDY48506	AT4G01120.1	18315949
AT1G32150.1	CDX69240	AT4G36730.1	18315949
AT1G32150.1	CDX75592	AT4G36730.1	18315949
AT1G32150.1	CDY24770	AT4G36730.1	18315949
AT1G32150.1	CDY35476	AT4G36730.1	18315949

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12261	Canola	nucleus	96.61	97.11
Bra023243.1-P	Field mustard	nucleus	88.51	96.31
AT1G32150.1	Thale cress	nucleus	82.51	81.23
CDY31695	Canola	nucleus	67.62	65.57
CDY40465	Canola	nucleus	50.39	64.33
CDY65764	Canola	nucleus	62.66	59.85
CDX84198	Canola	nucleus	67.89	56.64
Solyc08g005290.2.1	Tomato	nucleus	58.22	56.17
VIT_02s0012g02250.t01	Wine grape	nucleus	59.01	54.72
KRH39598	Soybean	nucleus	59.01	54.59
KRH74331	Soybean	nucleus	59.01	54.46
Solyc08g076100.2.1	Tomato	nucleus	57.96	54.28
KRH45342	Soybean	nucleus	57.18	52.52
KRH07569	Soybean	nucleus	56.92	52.4
KXG23316	Sorghum	nucleus	52.48	52.21
PGSC0003DMT400047522	Potato	nucleus	51.17	50.91
Zm00001d041142_P010	Maize	nucleus	50.39	50.52
TraesCS5B01G122000.2	Wheat	nucleus	50.65	50.0
GSMUA_Achr4P04530_001	Banana	nucleus	53.79	49.88
TraesCS5A01G115300.2	Wheat	nucleus	50.39	49.74
TraesCS5D01G124600.1	Wheat	nucleus	50.39	49.74
CDX84103	Canola	nucleus, plastid	43.34	47.98
GSMUA_Achr5P14150_001	Banana	nucleus	50.13	47.76
Os12t0233800-02	Rice	nucleus	38.64	47.59
GSMUA_Achr4P11610_001	Banana	nucleus	36.81	47.32
GSMUA_Achr6P01090_001	Banana	nucleus	50.13	46.49
Zm00001d039206_P001	Maize	nucleus	24.28	44.71
EES04440	Sorghum	nucleus	40.47	44.29
GSMUA_AchrUn_...	Banana	nucleus	43.6	43.83
Zm00001d015118_P001	Maize	nucleus	33.16	43.79
GSMUA_Achr4P18980_001	Banana	nucleus	45.69	43.42
Os02t0128200-01	Rice	nucleus	39.16	43.23
TraesCSU01G019200.1	Wheat	nucleus	38.38	42.61
TraesCS6A01G087400.2	Wheat	nucleus	38.38	42.36
Zm00001d024041_P002	Maize	nucleus	37.86	42.15
TraesCS6B01G110100.1	Wheat	nucleus	38.38	42.12
HORVU5Hr1G029130.19	Barley	nucleus	42.56	41.9
CDX69240	Canola	nucleus	34.2	41.85
HORVU6Hr1G016240.10	Barley	nucleus	38.38	41.64
CDX75592	Canola	nucleus	33.94	41.53
GSMUA_Achr4P27400_001	Banana	nucleus	44.39	41.36
CDY32123	Canola	nucleus	16.19	40.52
Zm00001d053967_P001	Maize	nucleus	32.9	40.13
CDY24770	Canola	nucleus	32.64	39.94
CDY35476	Canola	nucleus	32.11	39.3
CDX95685	Canola	nucleus	22.19	28.33
CDY07176	Canola	nucleus	25.33	26.72
CDY48506	Canola	nucleus	25.33	26.58
CDY42029	Canola	nucleus	27.42	25.36
CDX80004	Canola	golgi	27.68	23.93

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078GB74	UniProt:A0A078GB74	EnsemblPlants:CDY22589	ProteinID:CDY22589
ProteinID:CDY22589.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00019237001	InterPro:IPR004827
InterPro:MFMR	PFAM:PF00170	PFAM:PF07777	PFAM:PF16596	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF47	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0004EF1A10	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

BnaC05g24270DBnaC05g24270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GB74]

Coordinates

chrLK032133:+:427217..429993

Molecular Weight (calculated)

40838.8 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.974

Length

383 amino acids

Sequence
(BLAST)

001: MGSSEVDKSG EENEPKTPPP PSSAPVTSQE PSSAVATPDW SGFQAYSPMP PPHGYVASSP QPHPYMWGVQ HMMPPYGTPP HPYVAMYPPG GLYAHPSLPP
101: GSYPYSPYTM PSPNGMAEAS GNTGSGVEGD GKQAEAKEKL PIKRSKGSLG SLNMIIGKKN EAGKNSGASA NGACSKRHSG SDGTSEGSDA NSQNDSGSRH
201: NGKDGETASD SAQGPPRNGS NQPVNQIVPV TPVSATGVPA PQTNLNMGMD YWSGHGTTVP GVVVDGSQSQ TWVQDERELK RQRRKESNRE SARRSRLRKQ
301: AECDELAQRA DVLNGENASL RAEINKLRSQ YEEFVAENSA LKNRFSTVRS LEGVNLDVKE QEPETSTRQD VAETTRGSYN NSA

Best Arabidopsis Sequence Match ( AT1G32150.1 )
(BLAST)

001: MGSSEMEKSG KEKEPKTTPP STSSSAPATV VSQEPSSAVS AGVAVTQDWS GFQAYSPMPP HGYVASSPQP HPYMWGVQHM MPPYGTPPHP YVTMYPPGGM
101: YAHPSLPPGS YPYSPYAMPS PNGMAEASGN TGSVIEGDGK PSDGKEKLPI KRSKGSLGSL NMIIGKNNEA GKNSGASANG ACSKSAESGS DGSSDGSDAN
201: SQNDSGSRHN GKDGETASES GGSAHGPPRN GSNLPVNQTV AIMPVSATGV PGPPTNLNIG MDYWSGHGNV SGAVPGVVVD GSQSQPWLQV SDEREIKRQR
301: RKQSNRESAR RSRLRKQAEC DELAQRAEVL NGENSSLRAE INKLKSQYEE LLAENSSLKN KFSSAPSLEG GDLDKNEQEP QRSTRQDVA

Arabidopsis Description

BZIP68bZIP transcription factor 68 [Source:UniProtKB/Swiss-Prot;Acc:Q84LG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.