Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- peroxisome 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P09430_001 | Banana | cytosol | 48.75 | 43.82 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 68.75 | 6.67 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 68.75 | 6.67 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 68.75 | 6.67 |
| Bra039379.1-P | Field mustard | nucleus | 32.5 | 6.63 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 68.75 | 6.17 |
| KXG24955 | Sorghum | nucleus | 58.75 | 5.78 |
| Zm00001d050112_P011 | Maize | nucleus | 60.0 | 5.67 |
| AT3G13222.1 | Thale cress | nucleus | 36.25 | 5.11 |
| CDY43361 | Canola | nucleus | 35.0 | 4.84 |
| CDY24202 | Canola | nucleus | 33.75 | 4.79 |
| Solyc05g018750.2.1 | Tomato | nucleus | 48.75 | 4.78 |
| Solyc07g045230.2.1 | Tomato | nucleus | 51.25 | 4.68 |
| KRH14203 | Soybean | nucleus | 45.0 | 4.66 |
| Bra038015.1-P | Field mustard | nucleus | 35.0 | 4.6 |
| KRH73929 | Soybean | nucleus | 43.75 | 4.58 |
| CDY53767 | Canola | nucleus | 35.0 | 4.55 |
| KRH72609 | Soybean | nucleus | 50.0 | 4.52 |
| AT1G55820.1 | Thale cress | nucleus | 32.5 | 4.52 |
| KRH16977 | Soybean | nucleus | 48.75 | 4.44 |
| PGSC0003DMT400057353 | Potato | nucleus | 42.5 | 4.38 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 47.5 | 4.24 |
| VIT_19s0015g00930.t01 | Wine grape | nucleus | 41.25 | 4.2 |
| Os06t0206100-01 | Rice | nucleus | 43.75 | 4.1 |
| Os01t0663800-01 | Rice | plasma membrane | 36.25 | 3.41 |
| Os05t0566900-01 | Rice | extracellular | 36.25 | 3.4 |
| Os05t0581800-01 | Rice | nucleus | 26.25 | 2.46 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 6.25 | 0.94 |
| CDY53764 | Canola | extracellular, vacuole | 5.0 | 0.92 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 1.25 | 0.76 |
| Os03t0411000-01 | Rice | nucleus | 3.75 | 0.39 |
Protein Annotations
| EMBL:AK105353 | EnsemblPlants:Os09t0261400-01 | EnsemblPlantsGene:Os09g0261400 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:GIP1 | InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | ProteinID:BAD29555.1 |
| ProteinID:BAD38248.1 | ProteinID:BAF24623.1 | ProteinID:BAT07114.1 | ProteinID:EEE69301.1 | SUPFAM:SSF46934 | UniParc:UPI00003CE9E1 |
| UniProt:Q6EP65 | MapMan:35.2 | : | : | : | : |
Description
Protein of unknown function DUF1296 family protein. (Os09t0261400-01)
Coordinates
chr9:+:4554669..4555863
Molecular Weight (calculated)
9241.9 Da
IEP (calculated)
7.416
GRAVY (calculated)
-0.328
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MAAARVSIPA AVRRTIQNIK EIAGGHTDEE VYAVLRECNM DPNETTDRLL NQVALYGWWF HCRRSGFYRM DASTFATWNF
001: MSRISGDGGS RVSIPADLLQ TIQNIREVTG KQHSDEDIFS VFKECFSDPH ETTQKLLYLD TFHEVRSKRE RKKENLVPNT QGRGRTGRKN FASSYTDASN
101: GRSAAFKKQS GANHIIGGSG TASSAPNNAR NDTKPSSIMA PNPISLPSGI SNQKIQDAII SPVDKVDTEE QPLSKATSSS KDVVEPDKSK ESSVSVAVSD
201: SVVENDTQYA VVETFQIPQQ SERVIKSEVA ASKCKNESLL KSDVGERPHV TFPVHIQVAK MLENGLTFGS FDSNFVREAS SDKFTIGCDD SNIESSHGTA
301: ASARKDISTF SQDKNHEISN SAAQNELTLQ PDQTVLPEEG SEGDKVKNEV LPITDTHQAA KCDAPPISYP DQYSLAAAQQ AMHLYRQQYS LNYFPYGPYF
401: PPYYMPQPYI HQYLSPNGFQ QQSYLPPGDD APAPPGAELP LTHIKPGSDI GNSPPTTIPF SYTSYAFNHI PSAATINATH KEEKKENMYT TGPLSLANLQ
501: ASPMYNLSLQ GQPIAFPTMQ AGIRGLYQQT QPILAPLSIS ARTEPIGPSH VTNQQPQAAR TNLGNNY
101: GRSAAFKKQS GANHIIGGSG TASSAPNNAR NDTKPSSIMA PNPISLPSGI SNQKIQDAII SPVDKVDTEE QPLSKATSSS KDVVEPDKSK ESSVSVAVSD
201: SVVENDTQYA VVETFQIPQQ SERVIKSEVA ASKCKNESLL KSDVGERPHV TFPVHIQVAK MLENGLTFGS FDSNFVREAS SDKFTIGCDD SNIESSHGTA
301: ASARKDISTF SQDKNHEISN SAAQNELTLQ PDQTVLPEEG SEGDKVKNEV LPITDTHQAA KCDAPPISYP DQYSLAAAQQ AMHLYRQQYS LNYFPYGPYF
401: PPYYMPQPYI HQYLSPNGFQ QQSYLPPGDD APAPPGAELP LTHIKPGSDI GNSPPTTIPF SYTSYAFNHI PSAATINATH KEEKKENMYT TGPLSLANLQ
501: ASPMYNLSLQ GQPIAFPTMQ AGIRGLYQQT QPILAPLSIS ARTEPIGPSH VTNQQPQAAR TNLGNNY
Arabidopsis Description
GIP1GBF-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.