Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os05t0411600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | Os05t0411600-01 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75298 | Soybean | cytosol, nucleus | 23.23 | 72.73 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 68.71 | 68.27 |
| EES02078 | Sorghum | nucleus | 73.87 | 67.75 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 68.39 | 67.73 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 68.39 | 67.09 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 67.1 | 66.67 |
| KRH13261 | Soybean | cytosol | 26.45 | 66.13 |
| Zm00001d042042_P001 | Maize | nucleus | 70.32 | 64.12 |
| KRH23771 | Soybean | nucleus | 43.87 | 50.0 |
| KRH40033 | Soybean | nucleus | 43.23 | 49.26 |
| GSMUA_Achr10P... | Banana | nucleus | 42.26 | 48.34 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 41.94 | 48.33 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 40.65 | 48.28 |
| PGSC0003DMT400008944 | Potato | nucleus | 40.97 | 48.11 |
| AT1G33470.1 | Thale cress | cytosol | 37.42 | 47.35 |
| CDX73279 | Canola | cytosol | 36.77 | 47.11 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 40.65 | 46.67 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 38.71 | 46.33 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 38.71 | 45.8 |
| Os01t0876800-00 | Rice | nucleus | 42.26 | 43.67 |
| KRH62942 | Soybean | mitochondrion | 28.71 | 43.63 |
| CDY04769 | Canola | nucleus | 31.94 | 41.77 |
| Bra024547.1-P | Field mustard | nucleus | 31.94 | 41.42 |
| CDY69197 | Canola | nucleus | 29.68 | 40.89 |
| Bra012350.1-P | Field mustard | nucleus | 32.58 | 40.56 |
| CDY25759 | Canola | nucleus | 32.26 | 40.16 |
| Os02t0755400-01 | Rice | plastid | 22.58 | 39.77 |
| Bra010203.1-P | Field mustard | nucleus | 36.77 | 37.38 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 32.9 | 37.09 |
| Os02t0714000-01 | Rice | nucleus, plastid | 33.23 | 35.89 |
| Os03t0286500-01 | Rice | cytosol, nucleus, plastid | 32.58 | 32.58 |
| CDY67263 | Canola | nucleus | 32.9 | 31.1 |
| AT1G22910.3 | Thale cress | nucleus | 32.9 | 29.39 |
| Os06t0220600-01 | Rice | plastid | 31.94 | 28.86 |
| CDY13339 | Canola | mitochondrion | 15.16 | 27.98 |
| CDY21399 | Canola | mitochondrion | 9.68 | 20.69 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 38.71 | 17.99 |
| Os08t0320100-01 | Rice | nucleus | 17.74 | 15.71 |
| Os02t0221500-01 | Rice | nucleus | 20.0 | 15.62 |
| Os01t0614500-01 | Rice | nucleus | 22.26 | 15.44 |
| Os06t0566100-01 | Rice | cytosol, nucleus | 13.55 | 14.38 |
| Os01t0945800-01 | Rice | nucleus | 16.13 | 13.77 |
| Os07t0584500-01 | Rice | nucleus | 20.32 | 13.35 |
| Os11t0637700-01 | Rice | plasma membrane | 19.35 | 12.85 |
| Os07t0124600-01 | Rice | nucleus | 15.16 | 12.47 |
| Os02t0602600-00 | Rice | nucleus | 13.55 | 10.88 |
| Os04t0636900-02 | Rice | nucleus | 17.42 | 10.49 |
| Os01t0265800-01 | Rice | nucleus | 14.52 | 9.18 |
| Os05t0376000-00 | Rice | cytosol | 5.81 | 8.61 |
| Os08t0492100-02 | Rice | nucleus | 10.65 | 7.57 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:4325390 | EMBL:AK072960 | ProteinID:BAD87112.1 | ProteinID:BAD88161.1 |
| ProteinID:BAF07368.1 | ProteinID:BAS76309.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os01g0958500 | EnsemblPlants:Os01t0958500-01 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF2 | UniProt:Q5JK61 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00004C289A | RefSeq:XP_015622089.1 | SEG:seg | : |
Description
Similar to RNA binding protein-like. (Os01t0958500-01)
Coordinates
chr1:+:42247885..42255249
Molecular Weight (calculated)
31804.6 Da
IEP (calculated)
8.480
GRAVY (calculated)
-0.025
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSAGGGGG AAGQFGDTTL TKVFVGGLAW ETQKEGMRGY FEQFGDILEA VVITDKNTGR SKGYGFVTFR EPEAAMKACF DPYPVIDGRR ANCNLAYLGV
101: QRSKAAAASL QPYAGHMRAM KSIIQTGGGG ASLSMADHGI QQGIPTYNVY GYSPYFSDYG YPLSYYQAYG GLGAQYQMFA GGAAAGAAGL TMANPTGGGL
201: YSPYFQYGPA VAANAAAAGY AGMQYPQMYQ YAAAAAAVGA PTAATTASQL TAVAGLQQYA GTVALAPNST GQAAGMTMSL TAPTLPAPSP QYQYRLISSH
301: VAAAPEKPLA
101: QRSKAAAASL QPYAGHMRAM KSIIQTGGGG ASLSMADHGI QQGIPTYNVY GYSPYFSDYG YPLSYYQAYG GLGAQYQMFA GGAAAGAAGL TMANPTGGGL
201: YSPYFQYGPA VAANAAAAGY AGMQYPQMYQ YAAAAAAVGA PTAATTASQL TAVAGLQQYA GTVALAPNST GQAAGMTMSL TAPTLPAPSP QYQYRLISSH
301: VAAAPEKPLA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.