Factsheet for Os01t0614500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931
nucleus: 23777608
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G250700.1	Wheat	golgi	86.8	88.18
HORVU3Hr1G053990.1	Barley	nucleus	86.8	87.98
TraesCS3A01G220400.1	Wheat	nucleus	86.58	87.95
TraesCS3D01G232300.1	Wheat	nucleus	85.91	87.27
EES03272	Sorghum	nucleus	84.79	85.17
Zm00001d011336_P002	Maize	nucleus	83.45	83.26
Zm00001d044469_P003	Maize	nucleus	81.66	81.66
GSMUA_Achr5P09550_001	Banana	nucleus	48.1	57.8
GSMUA_Achr5P09540_001	Banana	nucleus	46.31	53.35
VIT_19s0014g01570.t01	Wine grape	nucleus	52.57	52.34
CDY26001	Canola	nucleus	46.53	51.11
KRH26210	Soybean	nucleus	49.66	50.8
KRH55109	Soybean	nucleus	50.34	50.68
CDY24106	Canola	nucleus	46.31	50.12
Bra039664.1-P	Field mustard	nucleus	46.53	50.12
CDY55846	Canola	nucleus	44.74	49.88
CDY25867	Canola	nucleus	44.52	49.14
AT3G15010.2	Thale cress	nucleus	44.3	49.01
PGSC0003DMT400008213	Potato	nucleus	46.09	48.58
Bra038113.1-P	Field mustard	nucleus	44.97	48.55
Solyc02g021560.2.1	Tomato	nucleus	45.64	47.33
PGSC0003DMT400039802	Potato	nucleus	46.76	46.86
KRH50169	Soybean	nucleus	39.82	46.35
KRH71299	Soybean	nucleus	39.37	45.83
Solyc12g014210.1.1	Tomato	nucleus	33.78	45.07
PGSC0003DMT400032256	Potato	nucleus	24.61	35.26
PGSC0003DMT400031324	Potato	cytosol	10.29	33.09
Os02t0755400-01	Rice	plastid	11.86	30.11
PGSC0003DMT400031418	Potato	extracellular, golgi	23.49	28.85
Os01t0265800-01	Rice	nucleus	31.32	28.57
Os04t0636900-02	Rice	nucleus	32.44	28.16
Os02t0602600-00	Rice	nucleus	23.04	26.68
Os06t0622900-01	Rice	cytosol, mitochondrion, nucleus	15.44	25.09
Os06t0566100-01	Rice	cytosol, nucleus	16.11	24.66
Os02t0221500-01	Rice	nucleus	21.7	24.43
Os02t0714000-01	Rice	nucleus, plastid	15.44	24.04
Os01t0958500-01	Rice	nucleus	15.44	22.26
Os08t0320100-01	Rice	nucleus	17.0	21.71
Os01t0876800-00	Rice	nucleus	14.54	21.67
Os01t0945800-01	Rice	nucleus	17.23	21.21
Os03t0286500-01	Rice	cytosol, nucleus, plastid	14.09	20.32
Os11t0637700-01	Rice	plasma membrane	19.24	18.42
Os06t0220600-01	Rice	plastid	14.09	18.37
Os07t0584500-01	Rice	nucleus	19.02	18.01
Os07t0124600-01	Rice	nucleus	14.54	17.24
Os05t0376000-00	Rice	cytosol	7.83	16.75
Os08t0492100-02	Rice	nucleus	11.41	11.7

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4326641	ProteinID:BAD61233.1	ProteinID:BAF05481.1	ProteinID:BAS73147.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004812	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006950	GO:GO:0006952	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0009058	GO:GO:0009693	GO:GO:0009987	GO:GO:0010150	GO:GO:0016020	GO:GO:0016021
GO:GO:0019538	GO:GO:0043039	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os01g0614500
EnsemblPlants:Os01t0614500-01	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	UniProt:Q5ZDX8
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00004504D6	RefSeq:XP_015619444.1
RefSeq:XP_015619449.1	RefSeq:XP_015619456.1	SEG:seg	:	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os01t0614500-01)

Coordinates

chr1:-:24369103..24372156

Molecular Weight (calculated)

44272.4 Da

IEP (calculated)

8.761

GRAVY (calculated)

-0.195

Length

447 amino acids

Sequence
(BLAST)

001: MDPYPKKRKP DENGAAVASS PAAGAAALGL TRDDLLRLVE PLSRDQLADI AATAALASGV ALDAVRAAAD RDPALRKLFV RGLGWETNSD SLRAIFSAFG
101: DLEEAVVITD KSTGRSKGYG FVTFRHADSA VLALKEPSKK IDGRMTVTQL AAAGAAGGAS GGAAGAGGAP AADVSLRKIF VGNVPADMPS ERLLAHFAAY
201: GEIEEGPLGF DKQTGKFRGF ALFVYKTPEG AQASLVDSVK VIDGHQLVCK LAIEGKKGKQ SQQQQQQSGP GGAQPPQMLQ GGPPDMPGSG LGLGGPQMGA
301: QYGGPGSLSS YGAFGGVGAG LGGPNPYANL PSSMGGGGAG LGSLGNQMPS GMGGAGAGAY GPGGLGGGSF GGSSQFGAGG MGAYGGLGMG GASSLYRMQQ
401: GSGGLPSGGY GEGNYPLPGP GFRGQEGGMS PGPGGRAPMY PNVPPYF

Best Arabidopsis Sequence Match ( AT2G41060.2 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.