Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400031324 | Potato | cytosol | 31.09 | 69.78 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 75.32 | 64.56 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 35.58 | 29.84 |
| CDY55846 | Canola | nucleus | 35.9 | 27.93 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 34.62 | 27.84 |
| CDY25867 | Canola | nucleus | 34.94 | 26.91 |
| AT3G15010.2 | Thale cress | nucleus | 34.62 | 26.73 |
| Bra038113.1-P | Field mustard | nucleus | 35.26 | 26.57 |
| CDY26001 | Canola | nucleus | 34.62 | 26.54 |
| Bra039664.1-P | Field mustard | nucleus | 34.94 | 26.27 |
| CDY24106 | Canola | nucleus | 34.62 | 26.15 |
| VIT_19s0014g01570.t01 | Wine grape | nucleus | 37.18 | 25.84 |
| EES03272 | Sorghum | nucleus | 35.58 | 24.94 |
| Zm00001d011336_P002 | Maize | nucleus | 35.58 | 24.78 |
| TraesCS3B01G250700.1 | Wheat | golgi | 34.94 | 24.77 |
| TraesCS3A01G220400.1 | Wheat | nucleus | 34.94 | 24.77 |
| HORVU3Hr1G053990.1 | Barley | nucleus | 34.94 | 24.72 |
| PGSC0003DMT400039802 | Potato | nucleus | 35.26 | 24.66 |
| Os01t0614500-01 | Rice | nucleus | 35.26 | 24.61 |
| TraesCS3D01G232300.1 | Wheat | nucleus | 34.62 | 24.55 |
| KRH26210 | Soybean | nucleus | 34.29 | 24.49 |
| Zm00001d044469_P003 | Maize | nucleus | 34.94 | 24.38 |
| KRH55109 | Soybean | nucleus | 33.65 | 23.65 |
| PGSC0003DMT400008213 | Potato | nucleus | 32.05 | 23.58 |
| PGSC0003DMT400072501 | Potato | nucleus | 30.45 | 23.06 |
| PGSC0003DMT400016249 | Potato | nucleus | 31.41 | 19.92 |
| PGSC0003DMT400058431 | Potato | nucleus | 31.09 | 19.8 |
| PGSC0003DMT400025900 | Potato | nucleus | 17.95 | 19.51 |
| PGSC0003DMT400027411 | Potato | nucleus | 15.06 | 18.5 |
| PGSC0003DMT400012372 | Potato | nucleus | 16.99 | 17.85 |
| PGSC0003DMT400044868 | Potato | nucleus | 19.23 | 17.54 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 15.71 | 17.38 |
| PGSC0003DMT400008944 | Potato | nucleus | 14.42 | 17.05 |
| PGSC0003DMT400006638 | Potato | nucleus | 19.87 | 16.06 |
| PGSC0003DMT400012586 | Potato | nucleus | 16.35 | 14.83 |
| PGSC0003DMT400032811 | Potato | nucleus | 17.95 | 14.4 |
| PGSC0003DMT400010280 | Potato | cytosol | 16.99 | 14.29 |
| PGSC0003DMT400035000 | Potato | nucleus | 20.19 | 14.25 |
| PGSC0003DMT400012369 | Potato | nucleus | 19.87 | 14.19 |
| PGSC0003DMT400076643 | Potato | nucleus | 21.47 | 14.13 |
| PGSC0003DMT400037271 | Potato | nucleus | 20.83 | 13.83 |
| PGSC0003DMT400009762 | Potato | nucleus | 17.31 | 13.6 |
| PGSC0003DMT400044195 | Potato | nucleus | 20.19 | 13.26 |
| PGSC0003DMT400074192 | Potato | nucleus | 18.59 | 12.24 |
| PGSC0003DMT400034757 | Potato | nucleus | 17.95 | 11.97 |
| PGSC0003DMT400060554 | Potato | nucleus | 17.63 | 11.7 |
| PGSC0003DMT400044866 | Potato | extracellular | 18.91 | 11.05 |
| PGSC0003DMT400008583 | Potato | nucleus | 14.42 | 7.53 |
Protein Annotations
| EntrezGene:107060805 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1AX37 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400012393 | PGSC:PGSC0003DMG400012393 | EnsemblPlants:PGSC0003DMT400032256 | PFscan:PS50102 | PANTHER:PTHR44678 | PANTHER:PTHR44678:SF2 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000294A1F6 | RefSeq:XP_015164604.1 |
Description
Heterogeneous nuclear ribonucleoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012393]
Coordinates
chr7:+:52781094..52782032
Molecular Weight (calculated)
35195.2 Da
IEP (calculated)
8.742
GRAVY (calculated)
-0.369
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLQKINQPL SHDQINKIVE GISALVPEVL QSVLSETKTM SSHDEFTHRK LFIGCLGFQT TSETLYRIFS PYGEIEEAFV AIDKSGVSKE YGFVNFKNVE
101: SAIMALKEPY KMIDGKMTVT KVAKLRTRVV EDESLRTIYL SNVPRDMFSG KLLEYFSSYG VIEKGPFGFD KETGKSRGYA IFVYKTIEGA KSAIYEPNKC
201: VDGYYLTCEM AIPRTMMKKS RVGPNLNVNF GPDFQVRYNN SRSRFNGCGS RPEVSQVGTQ YASYRGNGQM YAHKCDCGLG LNHMGSGLCS NMGYADYNLW
301: ASEFPRPKPL WY
101: SAIMALKEPY KMIDGKMTVT KVAKLRTRVV EDESLRTIYL SNVPRDMFSG KLLEYFSSYG VIEKGPFGFD KETGKSRGYA IFVYKTIEGA KSAIYEPNKC
201: VDGYYLTCEM AIPRTMMKKS RVGPNLNVNF GPDFQVRYNN SRSRFNGCGS RPEVSQVGTQ YASYRGNGQM YAHKCDCGLG LNHMGSGLCS NMGYADYNLW
301: ASEFPRPKPL WY
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
Arabidopsis Description
UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.