Factsheet for PGSC0003DMT400032811

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093340.2.1	Tomato	nucleus	97.43	97.43
KRH56541	Soybean	nucleus	37.28	72.5
VIT_14s0066g00480.t01	Wine grape	nucleus	65.3	67.55
KRH07154	Soybean	nucleus	63.24	66.13
KRG94084	Soybean	nucleus	61.95	64.44
KRG93213	Soybean	nucleus	61.95	63.93
PGSC0003DMT400044868	Potato	nucleus	51.41	58.48
AT5G40490.1	Thale cress	nucleus	60.67	55.79
CDY36357	Canola	nucleus	60.41	43.36
Bra025568.1-P	Field mustard	nucleus	60.41	43.12
CDY42577	Canola	nucleus	60.41	43.12
PGSC0003DMT400006638	Potato	nucleus	37.28	37.56
PGSC0003DMT400044866	Potato	extracellular	51.41	37.45
PGSC0003DMT400012372	Potato	nucleus	25.71	33.67
PGSC0003DMT400035000	Potato	nucleus	34.45	30.32
PGSC0003DMT400044195	Potato	nucleus	37.02	30.32
PGSC0003DMT400012369	Potato	nucleus	33.93	30.21
PGSC0003DMT400012586	Potato	nucleus	26.48	29.94
PGSC0003DMT400009762	Potato	nucleus	28.02	27.46
PGSC0003DMT400076643	Potato	nucleus	32.65	26.79
PGSC0003DMT400074192	Potato	nucleus	32.65	26.79
PGSC0003DMT400037271	Potato	nucleus	31.62	26.17
PGSC0003DMT400034757	Potato	nucleus	30.85	25.64
PGSC0003DMT400060554	Potato	nucleus	29.82	24.68
PGSC0003DMT400010280	Potato	cytosol	23.39	24.53
PGSC0003DMT400008944	Potato	nucleus	13.88	20.45
PGSC0003DMT400031324	Potato	cytosol	7.2	20.14
PGSC0003DMT400025900	Potato	nucleus	14.65	19.86
PGSC0003DMT400027411	Potato	nucleus	12.6	19.29
PGSC0003DMT400039802	Potato	nucleus	21.85	19.06
PGSC0003DMT400008213	Potato	nucleus	20.05	18.4
PGSC0003DMT400032256	Potato	nucleus	14.4	17.95
PGSC0003DMT400035478	Potato	nucleus, plastid	12.08	16.67
PGSC0003DMT400072501	Potato	nucleus	16.71	15.78
PGSC0003DMT400058431	Potato	nucleus	19.54	15.51
PGSC0003DMT400031418	Potato	extracellular, golgi	14.14	15.11
PGSC0003DMT400016249	Potato	nucleus	18.51	14.63
PGSC0003DMT400008583	Potato	nucleus	20.82	13.55

Protein Annotations

EntrezGene:102579349	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003730	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006378	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0048576
GO:GO:0048578	GO:GO:0097157	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1AY37	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400012601	PGSC:PGSC0003DMG400012601	EnsemblPlants:PGSC0003DMT400032811	PFscan:PS50102	PANTHER:PTHR45276
PANTHER:PTHR45276:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295EDE8
RefSeq:XP_006338617.1	SEG:seg	:	:	:	:

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012601]

Coordinates

chr2:+:47425045..47428814

Molecular Weight (calculated)

40155.1 Da

IEP (calculated)

7.813

GRAVY (calculated)

-0.650

Length

389 amino acids

Sequence
(BLAST)

001: MEEQNGTANG VKIKLEEEET NDDLRTTPDH QNDTGASQPL TGDGASPGKI FIGGLARETT SAQFVKHFGK YGEIIDSVIM KERRTGQPRG FGFVTYADPS
101: VVDKVIEDDH VINGKQVEIK RTIPRGGGSS SKDFKTKKIF VGGIPTTISE DEFRDFFLKF GEVKEHQIMR DHSTSRSRGF GFITFDTEKS VEDILANGNK
201: LDFSGTQVEI KKAEPKRPNA PQPAPFRRQG NPRAAFGGGL SDAYGGYGDS GYGIGAGAGP YRSGGPYGGR SSAFGGYSGA GMGGYGAYGG GGAYGGGFRE
301: EASFGYSSRY GSGAFGRGYD VGGGYGGAGE GYGGYAAGGG GYGSGYGAAG LGSGYGGDSA GGSMYGSSRG SYGGAGAGAG SGRYHPYGR

Best Arabidopsis Sequence Match ( AT5G40490.1 )
(BLAST)

001: MDPYGTETVI EDEIHDPKPS EDIEDDDDKS QPHSGGGVDS AGKIFVGGLA RETTSAEFLK HFGKYGEITD SVIMKDRKTG QPRGFGFVTY ADSSVVDKVI
101: QDNHIIIGKQ VEIKRTIPRG SMSSNDFKTK KIFVGGIPSS VDDDEFKEFF MQFGELKEHQ IMRDHSTGRS RGFGFVTYES EDMVDHLLAK GNRIELSGTQ
201: VEIKKAEPKK PNSVTTPSKR FGDSRSNFGG GYGDGYGGGH GGGYGGPGGP YKSGGGYGGG RSGGYGGYGG EFGGYGGGGY GGGVGPYRGE PALGYSGRYG
301: GGGGGYNRGG YSMGGGGGYG GGPGDMYGGS YGEPGGGYGG PSGSYGGGYG SSGIGGYGGG MGGAGGGGYR GGGGYDMGGV GGGGAGGYGA GGGGNGGGSF
401: YGGGGGRGGY GGGGSGRYHP YGR

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FM47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.