Factsheet for PGSC0003DMT400072501

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081330.1.1	Tomato	nucleus	90.29	89.21
VIT_06s0009g01190.t01	Wine grape	nucleus	44.42	40.04
PGSC0003DMT400058431	Potato	nucleus	38.11	32.04
PGSC0003DMT400032256	Potato	nucleus	23.06	30.45
PGSC0003DMT400016249	Potato	nucleus	34.95	29.27
PGSC0003DMT400008213	Potato	nucleus	29.61	28.77
PGSC0003DMT400039802	Potato	nucleus	29.37	27.13
PGSC0003DMT400031418	Potato	extracellular, golgi	19.66	22.25
PGSC0003DMT400031324	Potato	cytosol	7.28	21.58
PGSC0003DMT400025900	Potato	nucleus	13.59	19.51
PGSC0003DMT400035478	Potato	nucleus, plastid	13.35	19.5
PGSC0003DMT400008944	Potato	nucleus	12.38	19.32
PGSC0003DMT400044868	Potato	nucleus	15.53	18.71
PGSC0003DMT400027411	Potato	nucleus	10.92	17.72
PGSC0003DMT400032811	Potato	nucleus	15.78	16.71
PGSC0003DMT400012372	Potato	nucleus	11.65	16.16
PGSC0003DMT400012586	Potato	nucleus	13.35	15.99
PGSC0003DMT400076643	Potato	nucleus	17.96	15.61
PGSC0003DMT400037271	Potato	nucleus	17.72	15.53
PGSC0003DMT400006638	Potato	nucleus	14.32	15.29
PGSC0003DMT400074192	Potato	nucleus	17.48	15.19
PGSC0003DMT400034757	Potato	nucleus	16.5	14.53
PGSC0003DMT400010280	Potato	cytosol	12.86	14.29
PGSC0003DMT400060554	Potato	nucleus	16.26	14.26
PGSC0003DMT400012369	Potato	nucleus	15.05	14.19
PGSC0003DMT400035000	Potato	nucleus	14.81	13.8
PGSC0003DMT400044195	Potato	nucleus	15.78	13.68
PGSC0003DMT400009762	Potato	nucleus	13.11	13.6
PGSC0003DMT400044866	Potato	extracellular	15.29	11.8
PGSC0003DMT400008583	Potato	nucleus	12.62	8.7

Protein Annotations

EntrezGene:102601647	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1CQE8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400028209	PGSC:PGSC0003DMG400028209	EnsemblPlants:PGSC0003DMT400072501	PFscan:PS50102	PANTHER:PTHR44578	PANTHER:PTHR44578:SF3
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000294FB6D	RefSeq:XP_006339215.1
SEG:seg	:	:	:	:	:

Description

Heterogeneous nuclear ribonucleoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028209]

Coordinates

chr10:+:56618762..56622070

Molecular Weight (calculated)

44168.5 Da

IEP (calculated)

4.812

GRAVY (calculated)

-0.543

Length

412 amino acids

Sequence
(BLAST)

001: MGTKRKSSSS TSRPQPEEQK PKLQPQSSSE EEEEEEEYEE EPEESESEEK SESDLESDSD GEDEATKRDT IRKILEPFSK DQIIQQFKTA ASKNPSILSR
101: VTSFADSDST HRKIFVHGLG YDATSEQLLD AFKPYGKIEE CKLITDKVTG RAKGYGFVVF ETRVGAKRAL KEPQKIIGNR TTSCQLAALR SAVTGQDSGG
201: RKIYVGNVGQ DVDSEKLRAF FAKFGEIEEG PSGIDSVSRK FKGFAIFVYK SVEGANKALE EPQKSFDGCQ LFCKKFVENL NNAGSSNSNQ GVQQNEMSYG
301: FGVTPGILSG ASMNGIPLLI GQNMGFGINP LLAPGFNPLF GGIGAGYGIN GISPVVIASY GSDPALQGLG TYQGAQMWQP SLGGSAAMAT ITTPAKDSSG
401: AGGVTYPSSL GR

Best Arabidopsis Sequence Match ( AT2G41060.1 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.