Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077520.2.1 | Tomato | nucleus | 93.02 | 93.84 |
| Bra035441.1-P | Field mustard | mitochondrion, nucleus, plastid | 12.5 | 55.13 |
| KRH52137 | Soybean | nucleus | 48.84 | 44.44 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 43.02 | 42.77 |
| KRH61448 | Soybean | nucleus | 47.67 | 42.71 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 43.02 | 40.77 |
| Bra027860.1-P | Field mustard | cytosol, nucleus, peroxisome | 42.73 | 40.38 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 42.15 | 39.84 |
| AT1G58470.2 | Thale cress | cytosol, nucleus, plastid | 41.28 | 39.44 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 41.57 | 39.39 |
| PGSC0003DMT400035000 | Potato | nucleus | 38.37 | 29.86 |
| PGSC0003DMT400012372 | Potato | nucleus | 25.58 | 29.63 |
| VIT_18s0001g08640.t01 | Wine grape | nucleus | 40.41 | 29.51 |
| PGSC0003DMT400009762 | Potato | nucleus | 34.01 | 29.47 |
| PGSC0003DMT400044868 | Potato | nucleus | 28.78 | 28.95 |
| PGSC0003DMT400044195 | Potato | nucleus | 38.66 | 28.0 |
| PGSC0003DMT400006638 | Potato | nucleus | 30.81 | 27.46 |
| PGSC0003DMT400037271 | Potato | nucleus | 36.63 | 26.81 |
| PGSC0003DMT400032811 | Potato | nucleus | 29.94 | 26.48 |
| PGSC0003DMT400074192 | Potato | nucleus | 36.34 | 26.37 |
| PGSC0003DMT400076643 | Potato | nucleus | 35.76 | 25.95 |
| PGSC0003DMT400034757 | Potato | nucleus | 34.88 | 25.64 |
| PGSC0003DMT400060554 | Potato | nucleus | 33.14 | 24.26 |
| PGSC0003DMT400010280 | Potato | cytosol | 25.29 | 23.45 |
| PGSC0003DMT400012369 | Potato | nucleus | 27.62 | 21.74 |
| PGSC0003DMT400008944 | Potato | nucleus | 15.99 | 20.83 |
| PGSC0003DMT400044866 | Potato | extracellular | 29.07 | 18.73 |
| PGSC0003DMT400008583 | Potato | nucleus | 30.23 | 17.39 |
| PGSC0003DMT400027411 | Potato | nucleus | 12.79 | 17.32 |
| PGSC0003DMT400008213 | Potato | nucleus | 20.93 | 16.98 |
| PGSC0003DMT400031324 | Potato | cytosol | 6.69 | 16.55 |
| PGSC0003DMT400025900 | Potato | nucleus | 13.66 | 16.38 |
| PGSC0003DMT400032256 | Potato | nucleus | 14.83 | 16.35 |
| PGSC0003DMT400039802 | Potato | nucleus | 19.48 | 15.02 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 12.21 | 14.89 |
| PGSC0003DMT400072501 | Potato | nucleus | 15.99 | 13.35 |
| PGSC0003DMT400016249 | Potato | nucleus | 18.31 | 12.8 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 12.79 | 12.09 |
| PGSC0003DMT400058431 | Potato | nucleus | 16.57 | 11.63 |
Protein Annotations
| EntrezGene:102582431 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003727 | GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1A1H0 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400004919 | PGSC:PGSC0003DMG400004919 | EnsemblPlants:PGSC0003DMT400012586 | PFscan:PS50102 |
| PANTHER:PTHR44291 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000294EBCC |
| RefSeq:XP_006356840.1 | SEG:seg | : | : | : | : |
Description
DAZ-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004919]
Coordinates
chr4:-:66649177..66651015
Molecular Weight (calculated)
37386.6 Da
IEP (calculated)
6.407
GRAVY (calculated)
-0.553
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLDKSKLF CGGIPRDTSD EMLKDHFSKY GTVVSSVIAK DRETGRPRGF AFVTFSDPSA VDLALQDTHE ILGRMVEVKK AIPRSEQHQN QQLNSGGLNR
101: NSRTDGRSND QFRTKKIFVG GLSASLNQED FKSYFERFGT ITDVVVMHDN VTHRPRGFGF ITFDSEDAVE EVMQESFHEL SGKFVEVKKA IPKDGSNNSG
201: NGYHSRIGNG NGSNYNNIYQ QGMYPSYSPS YVYSPGPVPG YGSVAEYPYG FGTFGGGYPI GAYPGIGYGI TSLMPRGPWN NPTMTGLRGG PLPYGNTGGF
301: YPAYINSGVG VMNMATNGYG GILGAGINEK PGQVSVRDAQ EVSD
101: NSRTDGRSND QFRTKKIFVG GLSASLNQED FKSYFERFGT ITDVVVMHDN VTHRPRGFGF ITFDSEDAVE EVMQESFHEL SGKFVEVKKA IPKDGSNNSG
201: NGYHSRIGNG NGSNYNNIYQ QGMYPSYSPS YVYSPGPVPG YGSVAEYPYG FGTFGGGYPI GAYPGIGYGI TSLMPRGPWN NPTMTGLRGG PLPYGNTGGF
301: YPAYINSGVG VMNMATNGYG GILGAGINEK PGQVSVRDAQ EVSD
001: MDYDRYKLFV GGIAKETSEE ALKQYFSRYG AVLEAVVAKE KVTGKPRGFG FVRFANDCDV VKALRDTHFI LGKPVDVRKA IRKHELYQQP FSMQFLERKV
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
101: QQMNGGLREM SSNGVTSRTK KIFVGGLSSN TTEEEFKSYF ERFGRTTDVV VMHDGVTNRP RGFGFVTYDS EDSVEVVMQS NFHELSDKRV EVKRAIPKEG
201: IQSNNGNAVN IPPSYSSFQA TPYVPEQNGY GMVLQFPPPV FGYHHNVQAV QYPYGYQFTA QVANVSWNNP IMQPTGFYCA PPHPTPPPTN NLGYIQYMNG
301: FDLSGTNISG YNPLAWPVTG DAAGALIHQF VDLKLDVHSQ AHQRMNGGNM GIPLQNGTYI
Arabidopsis Description
RBP1RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C652]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.