Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g014600.1.1 | Tomato | nucleus | 89.45 | 97.03 |
| PGSC0003DMT400037271 | Potato | nucleus | 80.8 | 81.49 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 70.46 | 69.87 |
| KRG98573 | Soybean | nucleus | 67.93 | 67.22 |
| KRH46297 | Soybean | nucleus | 67.93 | 67.22 |
| KRH73860 | Soybean | nucleus | 66.46 | 66.04 |
| KRH14284 | Soybean | nucleus | 65.4 | 64.85 |
| GSMUA_Achr10P... | Banana | nucleus | 58.23 | 62.73 |
| GSMUA_Achr10P... | Banana | nucleus | 59.28 | 61.09 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 58.65 | 60.04 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 58.65 | 60.04 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 58.44 | 59.83 |
| TraesCSU01G068500.1 | Wheat | nucleus | 58.02 | 59.4 |
| Os11t0637700-01 | Rice | plasma membrane | 58.44 | 59.31 |
| PGSC0003DMT400074192 | Potato | nucleus | 58.23 | 58.23 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 60.76 | 57.6 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 53.38 | 57.24 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 56.12 | 56.48 |
| Bra028973.1-P | Field mustard | nucleus | 51.48 | 56.35 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 55.7 | 56.17 |
| Os07t0584500-01 | Rice | nucleus | 55.91 | 56.14 |
| EER97452 | Sorghum | nucleus | 55.7 | 56.05 |
| CDY11989 | Canola | nucleus | 50.84 | 55.79 |
| PGSC0003DMT400060554 | Potato | nucleus | 55.06 | 55.53 |
| CDY36753 | Canola | nucleus | 50.63 | 55.17 |
| PGSC0003DMT400034757 | Potato | nucleus | 54.43 | 55.13 |
| EER98147 | Sorghum | nucleus | 52.32 | 54.75 |
| EER96020 | Sorghum | nucleus | 52.53 | 54.73 |
| Zm00001d007772_P001 | Maize | nucleus | 51.69 | 54.57 |
| AT4G26650.1 | Thale cress | nucleus | 52.32 | 54.51 |
| Zm00001d019079_P001 | Maize | cytosol | 51.27 | 54.24 |
| CDX94301 | Canola | nucleus | 50.42 | 54.07 |
| Zm00001d006704_P002 | Maize | nucleus | 54.85 | 53.72 |
| CDX89316 | Canola | endoplasmic reticulum | 49.58 | 52.57 |
| Bra026413.1-P | Field mustard | nucleus | 46.62 | 52.25 |
| Zm00001d019084_P002 | Maize | nucleus | 50.0 | 52.2 |
| CDX92807 | Canola | nucleus | 49.37 | 52.0 |
| CDY46689 | Canola | nucleus | 49.79 | 50.97 |
| Bra019094.1-P | Field mustard | nucleus | 49.79 | 50.97 |
| CDY46690 | Canola | nucleus | 45.36 | 50.23 |
| TraesCS2A01G190400.1 | Wheat | plastid | 55.49 | 49.53 |
| AT5G55550.10 | Thale cress | nucleus | 51.69 | 48.32 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 55.06 | 48.24 |
| Zm00001d019086_P001 | Maize | nucleus | 53.59 | 47.74 |
| OQU83904 | Sorghum | nucleus | 43.88 | 46.22 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 59.07 | 41.24 |
| PGSC0003DMT400035000 | Potato | nucleus | 36.71 | 39.37 |
| PGSC0003DMT400044195 | Potato | nucleus | 38.61 | 38.53 |
| PGSC0003DMT400009762 | Potato | nucleus | 31.86 | 38.04 |
| PGSC0003DMT400012586 | Potato | nucleus | 25.95 | 35.76 |
| PGSC0003DMT400044868 | Potato | nucleus | 25.32 | 35.09 |
| PGSC0003DMT400032811 | Potato | nucleus | 26.79 | 32.65 |
| PGSC0003DMT400006638 | Potato | nucleus | 25.95 | 31.87 |
| PGSC0003DMT400012372 | Potato | nucleus | 19.2 | 30.64 |
| PGSC0003DMT400010280 | Potato | cytosol | 21.73 | 27.76 |
| PGSC0003DMT400012369 | Potato | nucleus | 24.26 | 26.32 |
| PGSC0003DMT400031324 | Potato | cytosol | 6.75 | 23.02 |
| PGSC0003DMT400044866 | Potato | extracellular | 25.53 | 22.66 |
| PGSC0003DMT400008944 | Potato | nucleus | 12.24 | 21.97 |
| PGSC0003DMT400032256 | Potato | nucleus | 14.13 | 21.47 |
| PGSC0003DMT400008213 | Potato | nucleus | 17.93 | 20.05 |
| PGSC0003DMT400025900 | Potato | nucleus | 12.03 | 19.86 |
| PGSC0003DMT400027411 | Potato | nucleus | 10.55 | 19.68 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 14.35 | 18.68 |
| PGSC0003DMT400039802 | Potato | nucleus | 17.51 | 18.61 |
| PGSC0003DMT400072501 | Potato | nucleus | 15.61 | 17.96 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 9.7 | 16.31 |
| PGSC0003DMT400008583 | Potato | nucleus | 19.83 | 15.72 |
| PGSC0003DMT400058431 | Potato | nucleus | 15.82 | 15.31 |
| PGSC0003DMT400016249 | Potato | nucleus | 14.56 | 14.02 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1CX52 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400029803 | PGSC:PGSC0003DMG400029803 | EnsemblPlants:PGSC0003DMT400076643 | PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002960321 | SEG:seg |
Description
Heterogeneous nuclear ribonucleoprotein 27C [Source:PGSC_GENE;Acc:PGSC0003DMG400029803]
Coordinates
chr12:-:9641755..9646790
Molecular Weight (calculated)
50043.4 Da
IEP (calculated)
8.456
GRAVY (calculated)
-0.471
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: METDLGKLFI GGISWDTDEE RLKEYFTSYG EVVEAVIMRD RNTGRARGFG FVVFANPAVA ERVVNEKHII DGRTVEAKKA VPRDDQQIIN RNNSSIQGSP
101: GPGRTKKIFV GGLASTVTES DFKTYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEDAV DRALYKTFHD LNGKMIEVKR AVPKDLSPGP NRSPFTGFNY
201: GLGRVNNFLN NYAQGYSLGS VGGYGVRMDG RFSPVSSGRT SFSQFSSPAY GMGVNLDPAL SPAFAGASNF SNNLGYGRVL NPYFTGNSSR YTTPIGYNTG
301: SNRGDSLLSS PTRNVWGNGG LNSSPGPGSS GSFLGSGTGG YGVFGNNGAN WGSSAVSAPV GSASGYGGRN VGFRSGGNGY GLGSGGLARS NAAGGVPTSF
401: AASGGAYEGS YGDVYRSGSM YGDSTWQAVS SDMEGSNTFG YGLENPADDS AKDSENYIGN YSIANRQSNR GIAA
101: GPGRTKKIFV GGLASTVTES DFKTYFDQFG TITDVVVMYD HNTQRPRGFG FITYDSEDAV DRALYKTFHD LNGKMIEVKR AVPKDLSPGP NRSPFTGFNY
201: GLGRVNNFLN NYAQGYSLGS VGGYGVRMDG RFSPVSSGRT SFSQFSSPAY GMGVNLDPAL SPAFAGASNF SNNLGYGRVL NPYFTGNSSR YTTPIGYNTG
301: SNRGDSLLSS PTRNVWGNGG LNSSPGPGSS GSFLGSGTGG YGVFGNNGAN WGSSAVSAPV GSASGYGGRN VGFRSGGNGY GLGSGGLARS NAAGGVPTSF
401: AASGGAYEGS YGDVYRSGSM YGDSTWQAVS SDMEGSNTFG YGLENPADDS AKDSENYIGN YSIANRQSNR GIAA
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.